RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 NPTX2P47972 431 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PUDPQ08623 228 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 DUSP4Q13115 394 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 NUGGCQ68CJ6 796 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 RGS9BPQ6ZS82 235 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ARHGAP22Q7Z5H3 698 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 KIAA0319LQ8IZA0 1049 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 LGI2Q8N0V4 545 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 CELF5Q8N6W0 485 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 OR6P1Q8NGX9 317 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 EEF2KMTQ96G04 330 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 MYOCQ99972 504 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ZDHHC6Q9H6R6 413 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PCMTD2Q9NV79 361 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 LNPEPQ9UIQ6 1025 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 CPED1A4D0V7 1026 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 H2AFYO75367 372 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 HLA-DRAP01903 254 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 SMAD3P84022 425 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 C17orf50Q8WW18 174 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 LRRC46Q96FV0 321 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 DCBLD2Q96PD2 775 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TEX12Q9BXU0 123 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.53□□□□□ -1.25e-7■□□□□ 8.7
SCN9A-202ENST00000409435 FAM95CA0A1B0GW59 222 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 COL6A1P12109 1028 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TIE1P35590 1138 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 SCNN1BP51168 640 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 YWHAGP61981 247 aaKnown RBP eCLIP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PURAQ00577 322 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TRIM32Q13049 653 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PDGFRLQ15198 375 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 DEPDC1Q5TB30 811 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 C1orf146Q5VVC0 180 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM154Q6P9G4 183 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 CHMP1BQ7LBR1 199 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 FAM133AQ8N9E0 248 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 THOC1Q96FV9 657 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 MTMR12Q9C0I1 747 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 RBAK-RBAKDNI3L0D1 243 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 SMAPO00193 183 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PTPN3P26045 913 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 IFNA8P32881 189 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TKTL1P51854 596 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 XRCC4Q13426 336 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 SETMARQ53H47 684 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TPGS2Q68CL5 300 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 NAIF1Q69YI7 327 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 HJURPQ8NCD3 748 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 DIS3LQ8TF46 1054 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 DNAJC1Q96KC8 554 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 KXD1Q9BQD3 176 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM245Q9H330 911 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 HBS1LQ9Y450 684 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 XRN1Q8IZH2 1706 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 RGS20O76081 388 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 MYO1DO94832 1006 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ATF2P15336 505 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PPP3CCP48454 512 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 BLKP51451 505 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PLIN5Q00G26 463 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 B4GALNT2Q8NHY0 566 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 NKD2Q969F2 451 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 LRRC37BQ96QE4 947 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 SLC13A1Q9BZW2 595 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 RIOX1Q9H6W3 641 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ATP13A1Q9HD20 1204 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 IP6K2Q9UHH9 426 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 CDC23Q9UJX2 597 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 CDH9Q9ULB4 789 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ERVW-1Q9UQF0 538 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 KLHL20Q9Y2M5 609 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ARL2BPQ9Y2Y0 163 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF521Q96K83 1311 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 MAFO75444 373 aaPredicted RBP7.52□□□□□ -1.2
SCN9A-202ENST00000409435 PDGFRAP16234 1089 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 TNNI3P19429 210 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 KRT20P35900 424 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 PSMD8P48556 350 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 EIF3BP55884 814 aaKnown RBP7.52□□□□□ -1.2
SCN9A-202ENST00000409435 TOMM20Q15388 145 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 WDR49Q8IV35 697 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 NUP93Q8N1F7 819 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 ZSCAN18Q8TBC5 510 aaPredicted RBP7.52□□□□□ -1.2
SCN9A-202ENST00000409435 WDR60Q8WVS4 1066 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 C2orf49Q9BVC5 232 aaPredicted RBP7.52□□□□□ -1.2
SCN9A-202ENST00000409435 DPH5Q9H2P9 285 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 COPS7BQ9H9Q2 264 aaPredicted RBP7.52□□□□□ -1.2
SCN9A-202ENST00000409435 MARCH2Q9P0N8 246 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 MCM8Q9UJA3 840 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 SOX13Q9UN79 622 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 USP20Q9Y2K6 914 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 PPP2R2CQ9Y2T4 447 aa7.52□□□□□ -1.2
SCN9A-202ENST00000409435 ADGRA3Q8IWK6 1321 aa7.52□□□□□ -1.21
SCN9A-202ENST00000409435 SOWAHBA6NEL2 793 aa7.52□□□□□ -1.21
SCN9A-202ENST00000409435 C16orf96A6NNT2 1141 aa7.52□□□□□ -1.21
SCN9A-202ENST00000409435 E7ENQ6 273 aa7.52□□□□□ -1.21
SCN9A-202ENST00000409435 PITPNM1O00562 1244 aa7.52□□□□□ -1.21
SCN9A-202ENST00000409435 KHNYNO15037 678 aaKnown RBP7.52□□□□□ -1.21
SCN9A-202ENST00000409435 CDC40O60508 579 aaKnown RBP eCLIP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms