RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ATP1A3P13637 1013 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CPA3P15088 417 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 IFNAR1P17181 557 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PCSK1P29120 753 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 S100A7P31151 101 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PIK3CAP42336 1068 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ACADSBP45954 432 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 GK3PQ14409 553 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ACAP1Q15027 740 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FAM83BQ5T0W9 1011 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CAPN12Q6ZSI9 719 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TAGAPQ8N103 731 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 AVL9Q8NBF6 648 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 GALNT6Q8NCL4 622 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MGARPQ8TDB4 240 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 SLC9A7Q96T83 725 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TRMOQ9BU70 441 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PDGFDQ9GZP0 370 aaPredicted RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL28Q9NXS3 571 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FRMPD2Q68DX3 1309 aaPredicted RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PNMA6EA0A0J9YXQ4 647 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MAN2B1O00754 1011 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CLIC2O15247 247 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 SNAP91O60641 907 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MYL2P10916 166 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 DUSP3P51452 185 aaPredicted RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ITIH4Q14624 930 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 AAGABQ6PD74 315 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 HERC6Q8IVU3 1022 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 GUF1Q8N442 669 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FAM81AQ8TBF8 368 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PYROXD1Q8WU10 500 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PPP1R16AQ96I34 528 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 EHD1Q9H4M9 534 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 UNKLQ9H9P5 680 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 USE1Q9NZ43 259 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 AHSPQ9NZD4 102 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 WARS2Q9UGM6 360 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 DOCK1Q14185 1865 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 A0A1W2PQ67 120 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ENTPD3O75355 529 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL18O94889 574 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ATG7O95352 703 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 INHAP05111 366 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CES1P23141 567 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 LSP1P33241 339 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 BACE1P56817 501 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TUBA1BP68363 451 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PDCLQ13371 301 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PTPN21Q16825 1174 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PITRM1Q5JRX3 1037 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 INTS11Q5TA45 600 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ANO7Q6IWH7 933 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PKN3Q6P5Z2 889 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TUBA1AQ71U36 451 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CYP4Z2PQ8N1L4 340 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FUBP3Q96I24 572 aaKnown RBP eCLIP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TNIP3Q96KP6 325 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FAM227BQ96M60 508 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 NELL2Q99435 816 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 WDR12Q9GZL7 423 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 RANBP17Q9H2T7 1088 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJC28Q9NX36 388 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 BTBD7Q9P203 1132 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 SIX4Q9UIU6 781 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 GRID1Q9ULK0 1009 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MAGEA13PA6NCF6 341 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 E2F3O00716 465 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 COPEO14579 308 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CLDN3O15551 220 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 COBLO75128 1261 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PABPC1P11940 636 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 SYN1P17600 705 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 KCNA5P22460 613 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 STOMP27105 288 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MTHFRP42898 656 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ERVK-9P63128 1117 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ERVK-24P63145 666 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 RBPJQ06330 500 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ABRQ12979 859 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MTX3Q5HYI7 312 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ZC3H12BQ5HYM0 836 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FKBP1CQ5VVH2 108 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 IQSEC1Q6DN90 963 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ESRP1Q6NXG1 681 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 WDR93Q6P2C0 686 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 KCTD1Q719H9 257 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CYFIP1Q7L576 1253 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 STX12Q86Y82 276 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 C10orf107Q8IVU9 208 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 SNX31Q8N9S9 440 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 NMD3Q96D46 503 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MRIQ9BWK5 157 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 AIPL1Q9NZN9 384 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF70Q9UC06 446 aaPredicted RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TPRKBQ9Y3C4 175 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PRKAR2AP13861 404 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 CCNA2P20248 432 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 IL4RP24394 825 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 HTR1BP28222 390 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms