RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 DQX1Q8TE96 717 aaKnown RBP18.96■□□□□ 0.63
HMGA1-201ENST00000311487 OVCA2Q8WZ82 227 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SUSD6Q92537 303 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SLC2A13Q96QE2 648 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 TMPRSS4Q9NRS4 437 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 GUCA1BQ9UMX6 200 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 TMEM191CA6NGB0 347 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 M0QYT0 321 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 DAB1O75553 588 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 PAPLNO95428 1278 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 POU2F2P09086 479 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 CCDC175P0C221 793 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 AVPR1AP37288 418 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 C10orf76Q5T2E6 689 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SNX30Q5VWJ9 437 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ARID3BQ8IVW6 561 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-201ENST00000311487 CMTM8Q8IZV2 173 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 FAM204AQ9H8W3 233 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 DDIT4Q9NX09 232 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 CLIC5Q9NZA1 410 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 MARCH2Q9P0N8 246 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 USTQ9Y2C2 406 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 CPQQ9Y646 472 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SLC12A8A0AV02 714 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 TRUB2O95900 331 aaKnown RBP18.95■□□□□ 0.62
HMGA1-201ENST00000311487 PSMA2P25787 234 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 MTHFRP42898 656 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 PSEN1P49768 467 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 FAM78AQ5JUQ0 283 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 OTUD1Q5VV17 481 aaPredicted RBP18.95■□□□□ 0.62
HMGA1-201ENST00000311487 PPP1R2P3Q6NXS1 205 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 LEMD2Q8NC56 503 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 RIN3Q8TB24 985 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 TSC1Q92574 1164 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 TASP1Q9H6P5 420 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 MRPL47Q9HD33 250 aaKnown RBP18.95■□□□□ 0.62
HMGA1-201ENST00000311487 SCINQ9Y6U3 715 aa18.95■□□□□ 0.62
HMGA1-201ENST00000311487 TRAV19A0A0A6YYK7 116 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 CTIFO43310 598 aaKnown RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 TCF4P15884 667 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 GPD1P21695 349 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 SDC4P31431 198 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 PPP3CCP48454 512 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 GSCP56915 257 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 SMAD4Q13485 552 aaKnown RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 MESDQ14696 234 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 MAGEB5Q9BZ81 275 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 LUC7LQ9NQ29 371 aaKnown RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 AVENQ9NQS1 362 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 DNMT3LQ9UJW3 386 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 DENND4CQ5VZ89 1909 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 MOCS3O95396 460 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 FGF19O95750 216 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 GLI1P08151 1106 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 NOS2P35228 1153 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 KIF5AQ12840 1032 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 FAM172AQ8WUF8 416 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 RSAD2Q8WXG1 361 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 RFFLQ8WZ73 363 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 USP13Q92995 863 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 RSPRY1Q96DX4 576 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 RPP25Q9BUL9 199 aaKnown RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 DDX23Q9BUQ8 820 aaKnown RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 IRX2Q9BZI1 471 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-201ENST00000311487 PIGVQ9NUD9 493 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 ASNSD1Q9NWL6 643 aa18.94■□□□□ 0.62
HMGA1-201ENST00000311487 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.94■□□□□ 0.629e-9■■■□□ 17.2
HMGA1-201ENST00000311487 ARHGAP25P42331 645 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 LEXMQ3ZCV2 418 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 ZC3H12AQ5D1E8 599 aaKnown RBP18.93■□□□□ 0.62
HMGA1-201ENST00000311487 SCYL2Q6P3W7 929 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 FAM131BQ86XD5 332 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 ARFGAP1Q8N6T3 406 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 RNF34Q969K3 372 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 ZFRQ96KR1 1074 aaKnown RBP18.93■□□□□ 0.62
HMGA1-201ENST00000311487 LRRC3BQ96PB8 259 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 NPY6RQ99463 290 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 KXD1Q9BQD3 176 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 DNAI1Q9UI46 699 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 CDH7Q9ULB5 785 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 INTUQ9ULD6 942 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 TRIOO75962 3097 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 MUC3AQ02505 3323 aa18.93■□□□□ 0.62
HMGA1-201ENST00000311487 DOCK8Q8NF50 2099 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 C2CD4DB7Z1M9 353 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 FANCGO15287 622 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 MOCS2O96007 188 aaPredicted RBP18.92■□□□□ 0.62
HMGA1-201ENST00000311487 GGCXP38435 758 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 SSR1P43307 286 aaKnown RBP18.92■□□□□ 0.62
HMGA1-201ENST00000311487 ZNF143P52747 638 aaPredicted RBP18.92■□□□□ 0.62
HMGA1-201ENST00000311487 SLC25A52Q3SY17 297 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 PARM1Q6UWI2 310 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 ANLNQ9NQW6 1124 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 PCSK1NQ9UHG2 260 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 XPO7Q9UIA9 1087 aaKnown RBP18.92■□□□□ 0.62
HMGA1-201ENST00000311487 MYO1FO00160 1098 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 LAMP2P13473 410 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 SCNN1AP37088 669 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 DEUP1Q05D60 604 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 TANGO2Q6ICL3 276 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms