RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CCT8L1PA6NM43 557 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 TBKBP1A7MCY6 615 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 GRXCR1A8MXD5 290 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 NRP1O14786 923 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 PAPSS1O43252 624 aaPredicted RBP17.46■□□□□ 0.39
CPSF4-201ENST00000292476 AP1G2O75843 785 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 IGFBP6P24592 240 aaPredicted RBP17.46■□□□□ 0.39
CPSF4-201ENST00000292476 OGDHQ02218 1023 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 ZNF252P-AS1Q0IIN9 211 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 CLEC20AQ6ZU45 233 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 PAQR9Q6ZVX9 377 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 RXFP2Q8WXD0 754 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 NKD2Q969F2 451 aaPredicted RBP17.46■□□□□ 0.39
CPSF4-201ENST00000292476 LPIN3Q9BQK8 851 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 PLCD4Q9BRC7 762 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 HEMGNQ9BXL5 484 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 MTIF3Q9H2K0 278 aaKnown RBP17.46■□□□□ 0.39
CPSF4-201ENST00000292476 KRT82Q9NSB4 513 aa17.46■□□□□ 0.39
CPSF4-201ENST00000292476 I3L4J1 428 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 DNALI1O14645 258 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 DNAJC8O75937 253 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 AMHP03971 560 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 KRT1P04264 644 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 LCP1P13796 627 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 HNRNPH1P31943 449 aaKnown RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 NFE2Q16621 373 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 KIAA0319Q5VV43 1072 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 SPOCD1Q6ZMY3 1216 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 TDRPQ86YL5 185 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 LRRC34Q8IZ02 419 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 ALLCQ8N6M5 410 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 UHMK1Q8TAS1 419 aaKnown RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 CFAP57Q96MR6 1250 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 PRMT1Q99873 361 aaKnown RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 RTP3Q9BQQ7 232 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 TRIM62Q9BVG3 475 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 CSNK1G1Q9HCP0 422 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 DNAJB4Q9UDY4 337 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 PRG3Q9Y2Y8 225 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 TTC3P53804 2025 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 LRCH4O75427 683 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 RASSF9O75901 435 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 ITGB1P05556 798 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 ITGAVP06756 1048 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 PTPN9P43378 593 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 MAP3K7CLP57077 242 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 SMARCB1Q12824 385 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 MORF4L2Q15014 288 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 KYNUQ16719 465 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 TFDP3Q5H9I0 405 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 VSTM1Q6UX27 236 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 GSTA5Q7RTV2 222 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 EMC1Q8N766 993 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 DMAP1Q9NPF5 467 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-201ENST00000292476 CNGB3Q9NQW8 809 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 EURLQ9NYK6 297 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 SLC4A7Q9Y6M7 1214 aa17.45■□□□□ 0.38
CPSF4-201ENST00000292476 hCG_1818297A0A087WSY0 165 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 TMEM120BA0PK00 339 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 OR6C75A6NL08 312 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 H7C4K7 107 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 CLDN5O00501 218 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 OAS1P00973 400 aaKnown RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 ALDH7A1P49419 539 aaKnown RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 VCPP55072 806 aaKnown RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 MRPS5P82675 430 aaKnown RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 RASA2Q15283 850 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 TRIP13Q15645 432 aaPredicted RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 BOLA3Q53S33 107 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 FBXW10Q5XX13 1052 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 ICE2Q659A1 982 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 ANKS1BQ7Z6G8 1248 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 SPATA2LQ8IUW3 424 aaPredicted RBP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 MYLPFQ96A32 169 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 FUBP3Q96I24 572 aaKnown RBP eCLIP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.44■□□□□ 0.38
CPSF4-201ENST00000292476 SHOC2Q9UQ13 582 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 GBF1Q92538 1859 aa17.44■□□□□ 0.38
CPSF4-201ENST00000292476 PIK3R2O00459 728 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 BAIAP3O94812 1187 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 VIMP08670 466 aaKnown RBP17.43■□□□□ 0.38
CPSF4-201ENST00000292476 MAGEA4P43358 317 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 SCTRP47872 440 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 SLC18A1P54219 525 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 YWHAZP63104 245 aaKnown RBP17.43■□□□□ 0.38
CPSF4-201ENST00000292476 ADIGQ0VDE8 80 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 XRCC4Q13426 336 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 LLGL1Q15334 1064 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 OASLQ15646 514 aaKnown RBP17.43■□□□□ 0.38
CPSF4-201ENST00000292476 CCDC142Q17RM4 750 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 P3H1Q32P28 736 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 ZNF280DQ6N043 979 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 MFSD7Q6UXD7 560 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 PPP1R21Q6ZMI0 780 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 ARHGEF18Q6ZSZ5 1173 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 SCML4Q8N228 414 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 DYDC1Q8WWB3 177 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 CKAP2Q8WWK9 683 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms