RNA–Protein interactions for RNA: ENST00000261897.5

PRPF40B-201, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRPF40B, Length 3,602 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-201ENST00000261897 P4HA1P13674 534 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 TMEM198Q66K66 360 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 TATDN1Q6P1N9 297 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 TTC33Q6PID6 262 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 FAM196AQ6ZSG2 479 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 ARMCX6Q7L4S7 300 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 RTKN2Q8IZC4 609 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 FIZ1Q96SL8 496 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 TBC1D22BQ9NU19 505 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 UBAP1Q9NZ09 502 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 VIL1P09327 827 aaKnown RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 SNHG28P0DPA3 235 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 XRCC1P18887 633 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 ARL1P40616 181 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 GRIA1P42261 906 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 ANKDD1AQ495B1 522 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 OGFOD2Q6N063 350 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 GPR141Q7Z602 305 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 PARP8Q8N3A8 854 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 DDHD1Q8NEL9 900 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 FERMT1Q9BQL6 677 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 AVENQ9NQS1 362 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 FZD1Q9UP38 647 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 DMTF1Q9Y222 760 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 TIAM2Q8IVF5 1701 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 CROCCQ5TZA2 2017 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 ATP9BO43861 1147 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 USP12O75317 370 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 MAP4P27816 1152 aaKnown RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 GNL1P36915 607 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 KPNA1P52294 538 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 CDH8P55286 799 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 SFSWAPQ12872 951 aaKnown RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 ARHGEF16Q5VV41 709 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 MON1BQ7L1V2 547 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 OR5B17Q8NGF7 314 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 DDX1Q92499 740 aaKnown RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 GINS2Q9Y248 185 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 NUB1Q9Y5A7 615 aa16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 MRPL42Q9Y6G3 142 aaKnown RBP16.42■□□□□ 0.22
PRPF40B-201ENST00000261897 NFIBO00712 420 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 TPP1O14773 563 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 GPC4O75487 556 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 ALOX15P16050 662 aaPredicted RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 AVPR1AP37288 418 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 MAPK11Q15759 364 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 PABPC1LQ4VXU2 614 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 TMEM179Q6ZVK1 233 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 ZNF512Q96ME7 567 aaPredicted RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 APOL2Q9BQE5 337 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 POLR3FQ9H1D9 316 aaPredicted RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 ARHGEF4Q9NR80 690 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 FAM49BQ9NUQ9 324 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 COL5A2P05997 1499 aaPredicted RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 CCDC166P0CW27 439 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 EEF1DP29692 281 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 MAGEA8P43361 318 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 GPC3P51654 580 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 TRAF2Q12933 501 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 C15orf59Q2T9L4 293 aaPredicted RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 CMPK2Q5EBM0 449 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 MTX3Q5HYI7 312 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 TDRD10Q5VZ19 366 aaKnown RBP16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 CPNE9Q8IYJ1 553 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 FAM47BQ8NA70 645 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 MBOAT7Q96N66 472 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 MTMR12Q9C0I1 747 aa16.41■□□□□ 0.22
PRPF40B-201ENST00000261897 WDR27A2RRH5 827 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 BPGMP07738 259 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 ITGB5P18084 799 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 CDKN2BP42772 138 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 THOP1P52888 689 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 RALGDSQ12967 914 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 FBXW8Q8N3Y1 598 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 JADE3Q92613 823 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 NPAS2Q99743 824 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 OXCT2Q9BYC2 517 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 TUT1Q9H6E5 874 aaKnown RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 DDX56Q9NY93 547 aaKnown RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 NARFQ9UHQ1 456 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 SNCAIPQ9Y6H5 919 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 VILLO15195 856 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 CLIC3O95833 236 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 PCYT1AP49585 367 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 NR1H2P55055 460 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 PIGHQ14442 188 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 CHST15Q7LFX5 561 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 METTL25Q8N6Q8 603 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 C7orf31Q8N865 590 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 ATP6V1E2Q96A05 226 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 RMND5BQ96G75 393 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 HEXIM2Q96MH2 286 aaKnown RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 HAPLN3Q96S86 360 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 M0QYV0 167 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 PDGFRAP16234 1089 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 ZFXP17010 805 aaPredicted RBP16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 CKMT2P17540 419 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 SLC5A2P31639 672 aa16.4■□□□□ 0.22
PRPF40B-201ENST00000261897 C21orf59P57076 290 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms