RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 TNFRSF10BO14763 440 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 ARL4AP40617 200 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 SLC5A3P53794 718 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 VSTM1Q6UX27 236 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 CEP57Q86XR8 500 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 ADAM7Q9H2U9 754 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 COX16Q9P0S2 106 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 HCSTQ9UBK5 93 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 TPX2Q9ULW0 747 aaKnown RBP15.46■□□□□ 0.07
CCDC47-201ENST00000225726 PCDHB5Q9Y5E4 795 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 F9P00740 461 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 IFNB1P01574 187 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CLTBP09497 229 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 GJA8P48165 433 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 GABPB1Q06547 395 aaPredicted RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 EFHC2Q5JST6 749 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 DARS2Q6PI48 645 aaKnown RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CEP128Q6ZU80 1094 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 EPB41L4BQ9H329 900 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 AAASQ9NRG9 546 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CWC15Q9P013 229 aaKnown RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 TRIM66O15016 1216 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 STIP1P31948 543 aaKnown RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CHKAP35790 457 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 MAGEA11P43364 429 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 GDF10P55107 478 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 EIF3BP55884 814 aaKnown RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 SCAPQ12770 1279 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 BSPRYQ5W0U4 402 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 TRMT10CQ7L0Y3 403 aaKnown RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 UNC45BQ8IWX7 931 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 C8orf48Q96LL4 319 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 C11orf49Q9H6J7 331 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 FAM204AQ9H8W3 233 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 WDR6Q9NNW5 1121 aaKnown RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 H3BRJ5 948 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 H7C0C1 242 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 H7C4K7 107 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 NUDT17P0C025 328 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 ATP5OP48047 213 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CEP85LQ5SZL2 805 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 DENND2CQ68D51 928 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.45■□□□□ 0.066e-7■■■■■ 77.3
CCDC47-201ENST00000225726 PCGF5Q86SE9 256 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CCDC25Q86WR0 208 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 PYROXD2Q8N2H3 581 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 OXCT2Q9BYC2 517 aaPredicted RBP15.45■□□□□ 0.06
CCDC47-201ENST00000225726 MAGEB5Q9BZ81 275 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 C10orf88Q9H8K7 445 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 FBXW11Q9UKB1 542 aa15.45■□□□□ 0.06
CCDC47-201ENST00000225726 CFAP69A5D8W1 941 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 NR2C2P49116 596 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 MORF4L2Q15014 288 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 SCN4BQ8IWT1 228 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 SCAMP5Q8TAC9 235 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 EDEM1Q92611 657 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 DDIT4Q9NX09 232 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 LTBP2Q14767 1821 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 BRCA2P51587 3418 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 ADRA1BP35368 520 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 ZC3H18Q86VM9 953 aaKnown RBP15.44■□□□□ 0.06
CCDC47-201ENST00000225726 ZCCHC9Q8N567 271 aaKnown RBP15.44■□□□□ 0.06
CCDC47-201ENST00000225726 ADAM32Q8TC27 787 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 SEMA4AQ9H3S1 761 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 HEY1Q9Y5J3 304 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 MYO16Q9Y6X6 1858 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 GOLGA6L10A6NI86 522 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 GOT1P17174 413 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 YWHAGP61981 247 aaKnown RBP eCLIP15.44■□□□□ 0.06
CCDC47-201ENST00000225726 ZNF844Q08AG5 666 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 PKN2Q16513 984 aaKnown RBP15.44■□□□□ 0.06
CCDC47-201ENST00000225726 TTMPQ5BVD1 217 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 RNASEH2BQ5TBB1 312 aaKnown RBP15.44■□□□□ 0.06
CCDC47-201ENST00000225726 FAM71DQ8N9W8 422 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 RNF139Q8WU17 664 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 ABCC13Q9NSE7 274 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 SHOC2Q9UQ13 582 aa15.44■□□□□ 0.06
CCDC47-201ENST00000225726 PLXNA3P51805 1871 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 BCLAF3A2AJT9 711 aaKnown RBP15.43■□□□□ 0.06
CCDC47-201ENST00000225726 RPL22P35268 128 aaKnown RBP15.43■□□□□ 0.06
CCDC47-201ENST00000225726 XRCC4Q13426 336 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 ARL13BQ3SXY8 428 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 OR2W6PQ8NHA6 318 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 ARL8AQ96BM9 186 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 VWCEQ96DN2 955 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 TMBIM4Q9HC24 238 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.43■□□□□ 0.063e-32■■■■□ 20.5
CCDC47-201ENST00000225726 NT5C1B-RDH14C9J2C7 533 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 RIPK2O43353 540 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 TBC1D4O60343 1298 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 CXCR3P49682 368 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 SMARCB1Q12824 385 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 NCBP2-AS2Q69YL0 99 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 ANKS3Q6ZW76 656 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 TAC4Q86UU9 113 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 CDKL3Q8IVW4 592 aaPredicted RBP15.43■□□□□ 0.06
CCDC47-201ENST00000225726 RTP4Q96DX8 246 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 B3GALT6Q96L58 329 aa15.43■□□□□ 0.06
CCDC47-201ENST00000225726 GOLGA6CA6NDK9 693 aa15.42■□□□□ 0.06
CCDC47-201ENST00000225726 DGKIO75912 1065 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms