RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 GOLGA8DPQ0D2H9 430 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 HSF5Q4G112 596 aaPredicted RBP23.22■■□□□ 1.31
VTI1B-201ENST00000216456 RNF43Q68DV7 783 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 CYP2U1Q7Z449 544 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 PIGKQ92643 395 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 XPO6Q96QU8 1125 aaKnown RBP23.22■■□□□ 1.31
VTI1B-201ENST00000216456 CD248Q9HCU0 757 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 TMEM74BQ9NUR3 256 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 AGO1Q9UL18 857 aaKnown RBP23.22■■□□□ 1.31
VTI1B-201ENST00000216456 PPP1R3GB7ZBB8 358 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 NTSR1P30989 418 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 DGKGP49619 791 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 PSEN1P49768 467 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 STX17P56962 302 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 ADIGQ0VDE8 80 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 FYB2Q5VWT5 728 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 TTI2Q6NXR4 508 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 DENND1CQ8IV53 801 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 CHPFQ8IZ52 775 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 EDEM1Q92611 657 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 FAXDC2Q96IV6 333 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 FSCN3Q9NQT6 498 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 MARCH2Q9P0N8 246 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 CALCOCO1Q9P1Z2 691 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 WDR35Q9P2L0 1181 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 STARD13Q9Y3M8 1113 aa23.21■■□□□ 1.31
VTI1B-201ENST00000216456 NUP205Q92621 2012 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 C4orf47A7E2U8 309 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 O00370 1275 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 FOXD2O60548 495 aaPredicted RBP23.2■■□□□ 1.3
VTI1B-201ENST00000216456 ZBED1O96006 694 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 RGS7P49802 495 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 IRX4P78413 519 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 GEN1Q17RS7 908 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 SGO2Q562F6 1265 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 RSRC2Q7L4I2 434 aaKnown RBP23.2■■□□□ 1.3
VTI1B-201ENST00000216456 TTC39CQ8N584 583 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 NELFBQ8WX92 580 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 UBXN6Q9BZV1 441 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 SFMBT1Q9UHJ3 866 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 CTNND2Q9UQB3 1225 aa23.2■■□□□ 1.3
VTI1B-201ENST00000216456 CNOT1A5YKK6 2376 aaKnown RBP23.2■■□□□ 1.3
VTI1B-201ENST00000216456 YJEFN3A6XGL0 299 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 E7ENQ6 273 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 PSMA7O14818 248 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 XPO1O14980 1071 aaKnown RBP23.19■■□□□ 1.3
VTI1B-201ENST00000216456 MAP3K13O43283 966 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 NDUFV2P19404 249 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 BCAT1P54687 386 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 CCDC40Q4G0X9 1142 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 PM20D1Q6GTS8 502 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 TMEM270Q6UE05 265 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 ARHGEF19Q8IW93 802 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 ZNF276Q8N554 614 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 LMO3Q8TAP4 145 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 DHTKD1Q96HY7 919 aaPredicted RBP23.19■■□□□ 1.3
VTI1B-201ENST00000216456 DNAI2Q9GZS0 605 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 FBXO10Q9UK96 956 aa23.19■■□□□ 1.3
VTI1B-201ENST00000216456 GIPC1O14908 333 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 MSI1O43347 362 aaKnown RBP23.18■■□□□ 1.3
VTI1B-201ENST00000216456 PENKP01210 267 aaPredicted RBP23.18■■□□□ 1.3
VTI1B-201ENST00000216456 LCP1P13796 627 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 COG7P83436 770 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 BST2Q10589 180 aaKnown RBP23.18■■□□□ 1.3
VTI1B-201ENST00000216456 PKDCCQ504Y2 493 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 N4BP2L1Q5TBK1 243 aaPredicted RBP23.18■■□□□ 1.3
VTI1B-201ENST00000216456 RRAGAQ7L523 313 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 LPCAT2Q7L5N7 544 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 TADA2BQ86TJ2 420 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 IPO4Q8TEX9 1081 aaKnown RBP23.18■■□□□ 1.3
VTI1B-201ENST00000216456 LRRC4Q9HBW1 653 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 PCDHB4Q9Y5E5 795 aa23.18■■□□□ 1.3
VTI1B-201ENST00000216456 GON4LQ3T8J9 2241 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 TSPAN3O60637 253 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 VDRP11473 427 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 ITPKAP23677 461 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 BRD2P25440 801 aaKnown RBP23.17■■□□□ 1.3
VTI1B-201ENST00000216456 MFAP3P55082 362 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 MORC3Q14149 939 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 TRMT11Q7Z4G4 463 aaKnown RBP23.17■■□□□ 1.3
VTI1B-201ENST00000216456 FMNL3Q8IVF7 1028 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 PPM1KQ8N3J5 372 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 KCNV2Q8TDN2 545 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 CLEC4CQ8WTT0 213 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 SORCS1Q8WY21 1168 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 SPACA7Q96KW9 195 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 GABRG3Q99928 467 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 LSM14BQ9BX40 385 aaKnown RBP23.17■■□□□ 1.3
VTI1B-201ENST00000216456 HESX1Q9UBX0 185 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 CYP8B1Q9UNU6 501 aa23.17■■□□□ 1.3
VTI1B-201ENST00000216456 CDX4O14627 284 aaPredicted RBP23.16■■□□□ 1.3
VTI1B-201ENST00000216456 KHNYNO15037 678 aaKnown RBP23.16■■□□□ 1.3
VTI1B-201ENST00000216456 STIM1Q13586 685 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 PREPLQ4J6C6 727 aaPredicted RBP23.16■■□□□ 1.3
VTI1B-201ENST00000216456 BSPRYQ5W0U4 402 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 PMF1Q6P1K2 205 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 NUDT18Q6ZVK8 323 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 C11orf74Q86VG3 221 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 ARHGAP18Q8N392 663 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 CEP63Q96MT8 703 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms