RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 WDR73Q6P4I2 378 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MTDHQ86UE4 582 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CYP4X1Q8N118 509 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TTLQ8NG68 377 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GIPC3Q8TF64 312 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 WNK4Q96J92 1243 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ASB16Q96NS5 453 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC3Q9BQI4 270 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PRKD2Q9BZL6 878 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SLC6A15Q9H2J7 730 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CCNA2P20248 432 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SFNP31947 248 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 HSPA9P38646 679 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SLC26A5P58743 744 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TOP3AQ13472 1001 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ATXN7L2Q5T6C5 722 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 KCNIP4Q6PIL6 250 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PXKQ7Z7A4 578 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ARFGAP2Q8N6H7 521 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 DDX47Q9H0S4 455 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PRG3Q9Y2Y8 225 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PTGES3LE9PB15 166 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RRP8O43159 456 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CABYRO75952 493 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TGM4P49221 684 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 C6orf132Q5T0Z8 1188 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ADGRG6Q86SQ4 1221 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 FAM131BQ86XD5 332 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZDHHC12Q96GR4 267 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TEKT5Q96M29 485 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TINAGL1Q9GZM7 467 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RUBCNLQ9H714 662 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 UGT2B4P06133 528 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ID4P47928 161 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 AIF1P55008 147 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MLF1P58340 268 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NR1H3Q13133 447 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MTMR1Q13613 665 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MBTPS1Q14703 1052 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MOGQ16653 247 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 VARS2Q5ST30 1063 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 LIN54Q6MZP7 749 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MPRIPQ6WCQ1 1025 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF704Q6ZNC4 412 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NUP54Q7Z3B4 507 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NECAB2Q7Z6G3 386 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SAMD11Q96NU1 681 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 BBS4Q96RK4 519 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PCYT2Q99447 389 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 USB1Q9BQ65 265 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 VPS25Q9BRG1 176 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZPBPQ9BS86 351 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 MND1Q9BWT6 205 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 LMAN2LQ9H0V9 348 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ENTPD7Q9NQZ7 604 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 DNMT3AQ9Y6K1 912 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 VIRMAQ69YN4 1812 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PTPRQQ9UMZ3 2332 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SCN10AQ9Y5Y9 1956 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 LIN7AO14910 233 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CFL1P23528 166 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 FNTBP49356 437 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 GLO1Q04760 184 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 C17orf67Q0P5P2 114 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 C16orf72Q14CZ0 275 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 PDIA6Q15084 440 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ARL13BQ3SXY8 428 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 AMZ1Q400G9 498 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RHOUQ7L0Q8 258 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZSWIM2Q8NEG5 633 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 FCGR1BQ92637 280 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TIMM29Q9BSF4 260 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 FEM1AQ9BSK4 669 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CHID1Q9BWS9 393 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 LIMD1Q9UGP4 676 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CSADQ9Y600 493 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 A0A0A0MRY4 1105 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 K7EPI3 171 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RNF103O00237 685 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RGS5O15539 181 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 DOK2O60496 412 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CAMLGP49069 296 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CASP6P55212 293 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ATL3Q6DD88 541 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RINT1Q6NUQ1 792 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 FBXO15Q8NCQ5 510 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CIB1Q99828 191 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 TRIM2Q9C040 744 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ELOVL6Q9H5J4 265 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 VPS9D1Q9Y2B5 631 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NPIPA5A0A0B4J1W7 369 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 NMT1P30419 496 aaKnown RBP3.68□□□□□ -1.82
SCN1A-221ENST00000641996 RORAP35398 523 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 KYAT1Q16773 422 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 FAM47AQ5JRC9 791 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF280BQ86YH2 543 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CTAGE3PQ8IX95 158 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 CDCA5Q96FF9 252 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SLX1AQ9BQ83 275 aa3.68□□□□□ -1.82
SCN1A-221ENST00000641996 SPON2Q9BUD6 331 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms