RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	SERPINC1	P01008	464 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	MME	P08473	750 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	GJA4	P35212	333 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	STAT1	P42224	750 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	PTPN20	Q4JDL3	420 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	FILIP1L	Q4L180	1135 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	RHBDF2	Q6PJF5	856 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	ATP2A3	Q93084	1043 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	CLDN23	Q96B33	292 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	PPP1R13B	Q96KQ4	1090 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	CDK5RAP1	Q96SZ6	601 aa	Known RBP	27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	OSBPL6	Q9BZF3	934 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	TSPY26P	Q9H489	355 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	FBRSL1	Q9HCM7	1045 aa	Known RBP	27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	MARCH2	Q9P0N8	246 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	SFMBT1	Q9UHJ3	866 aa		27.95	■■■□□ 2.06
VEGFA-231	ENST00000640499	MIA3	Q5JRA6	1907 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	LTF	P02788	710 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	ERBB2	P04626	1255 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	CYP17A1	P05093	508 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	COL9A1	P20849	921 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	PBX1	P40424	430 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	TAF5	Q15542	800 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499		Q6ZNB5	142 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	TADA2B	Q86TJ2	420 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	SPAG5	Q96R06	1193 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	ABCC13	Q9NSE7	274 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	NDRG2	Q9UN36	371 aa	Known RBP	27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	SH3BP1	Q9Y3L3	701 aa		27.94	■■■□□ 2.06
VEGFA-231	ENST00000640499	FAM170A	A1A519	330 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	FMO1	Q01740	532 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	DHCR24	Q15392	516 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	MSANTD2	Q6P1R3	559 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	RSRC2	Q7L4I2	434 aa	Known RBP	27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	CPA6	Q8N4T0	437 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	P2RY11	Q96G91	374 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	MSANTD3	Q96H12	275 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	NELL2	Q99435	816 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	TBC1D14	Q9P2M4	693 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	NAALADL1	Q9UQQ1	740 aa		27.93	■■■□□ 2.06
VEGFA-231	ENST00000640499	GOLGA6L19	H0YKK7	550 aa		27.92	■■■□□ 2.06
VEGFA-231	ENST00000640499	SLC9A3R1	O14745	358 aa	Predicted RBP	27.92	■■■□□ 2.06
VEGFA-231	ENST00000640499	CHRNB1	P11230	501 aa		27.92	■■■□□ 2.06
VEGFA-231	ENST00000640499	ZNF445	P59923	1031 aa		27.92	■■■□□ 2.06
VEGFA-231	ENST00000640499	PON2	Q15165	354 aa		27.92	■■■□□ 2.06
VEGFA-231	ENST00000640499	TTYH3	Q9C0H2	523 aa		27.92	■■■□□ 2.06
VEGFA-231	ENST00000640499	SLC12A8	A0AV02	714 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	NFATC1	O95644	943 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	HMBS	P08397	361 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	UBASH3A	P57075	661 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	TPM4	P67936	248 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	CDR2	Q01850	454 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	TRIP4	Q15650	581 aa	Predicted RBP	27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	SYPL2	Q5VXT5	272 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	FMNL3	Q8IVF7	1028 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	TMEM35B	Q8NCS4	154 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	OLIG1	Q8TAK6	271 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	PCDHB18P	Q96TA0	734 aa		27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	OLA1	Q9NTK5	396 aa	Known RBP	27.91	■■■□□ 2.06
VEGFA-231	ENST00000640499	TRDMT1	O14717	391 aa	Known RBP	27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	MSI1	O43347	362 aa	Known RBP	27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	OPRD1	P41143	372 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	GALK1	P51570	392 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	NOMO3	P69849	1222 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	COG7	P83436	770 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	FSTL4	Q6MZW2	842 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	FAM183BP	Q6ZVS7	135 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	BEND5	Q7L4P6	421 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	IRF2BP2	Q7Z5L9	587 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	TMEM25	Q86YD3	366 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	DTWD2	Q8NBA8	298 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	PRSS33	Q8NF86	280 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	EZH1	Q92800	747 aa	Predicted RBP	27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	OTUB2	Q96DC9	234 aa		27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	MRPS17	Q9Y2R5	130 aa	Known RBP	27.9	■■■□□ 2.06
VEGFA-231	ENST00000640499	CYP1A1	P04798	512 aa	Predicted RBP	27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	ARID5A	Q03989	594 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	TMEM196	Q5HYL7	178 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	LY6G5C	Q5SRR4	150 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	E4F1	Q66K89	784 aa	Predicted RBP	27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	OLFML1	Q6UWY5	402 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	ZNF677	Q86XU0	584 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	RNF214	Q8ND24	703 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	RNF139	Q8WU17	664 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	CPA5	Q8WXQ8	436 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	LMAN1L	Q9HAT1	526 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	RBM12	Q9NTZ6	932 aa	Known RBP	27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	IFNK	Q9P0W0	207 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	STRIP2	Q9ULQ0	834 aa		27.89	■■■□□ 2.06
VEGFA-231	ENST00000640499	SART1	O43290	800 aa	Known RBP	27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	NCAM1	P13591	858 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	CORO1A	P31146	461 aa	Known RBP	27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	GABRB2	P47870	512 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	SLC6A11	P48066	632 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	PITX1	P78337	314 aa	Predicted RBP	27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	MESP2	Q0VG99	397 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	CCIN	Q13939	588 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	GAS6	Q14393	721 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	C2CD6	Q53TS8	623 aa		27.88	■■■□□ 2.05
VEGFA-231	ENST00000640499	NAA35	Q5VZE5	725 aa		27.88	■■■□□ 2.05

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms