RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 HMGXB4Q9UGU5 601 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 STARD13Q9Y3M8 1113 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 UBE4BO95155 1302 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 GOLGA8CPA6NN73 597 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 KIF20AO95235 890 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 STAU1O95793 577 aaKnown RBP15.84■□□□□ 0.13
SYNE2-228ENST00000639659 ZDHHC11BP0C7U3 371 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 CD6P30203 668 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 ATP5C1P36542 298 aaKnown RBP15.84■□□□□ 0.13
SYNE2-228ENST00000639659 SNX30Q5VWJ9 437 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 HTR3DQ70Z44 454 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 GPRIN1Q7Z2K8 1008 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 ZMIZ2Q8NF64 920 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 PLEKHO2Q8TD55 490 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 FOXJ1Q92949 421 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 TOE1Q96GM8 510 aaKnown RBP15.84■□□□□ 0.13
SYNE2-228ENST00000639659 GABRG3Q99928 467 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 GPR174Q9BXC1 333 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 KLF16Q9BXK1 252 aaPredicted RBP15.84■□□□□ 0.13
SYNE2-228ENST00000639659 GZF1Q9H116 711 aaPredicted RBP15.84■□□□□ 0.13
SYNE2-228ENST00000639659 KBTBD4Q9NVX7 518 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 ADAMTS20P59510 1910 aa15.84■□□□□ 0.13
SYNE2-228ENST00000639659 FREM2Q5SZK8 3169 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 LRRIQ3A6PVS8 624 aaPredicted RBP15.83■□□□□ 0.12
SYNE2-228ENST00000639659 SPTLC2O15270 562 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 HMBSP08397 361 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 FAM200BP0CF97 657 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 NCAM1P13591 858 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 ACO1P21399 889 aaKnown RBP15.83■□□□□ 0.12
SYNE2-228ENST00000639659 NDST1P52848 882 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 CUL4AQ13619 759 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 E2F4Q16254 413 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 COL28A1Q2UY09 1125 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 C10orf120Q5SQS8 335 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 C12orf29Q8N999 325 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 IQUBQ8NA54 791 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 MDM1Q8TC05 714 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 SNX19Q92543 992 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 ZNF419Q96HQ0 510 aaPredicted RBP15.83■□□□□ 0.12
SYNE2-228ENST00000639659 CUEDC2Q9H467 287 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 CCDC86Q9H6F5 360 aaKnown RBP15.83■□□□□ 0.12
SYNE2-228ENST00000639659 PRDM16Q9HAZ2 1276 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 COMMD8Q9NX08 183 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 OSER1Q9NX31 292 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 IL37Q9NZH6 218 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 APOBEC2Q9Y235 224 aaKnown RBP15.83■□□□□ 0.12
SYNE2-228ENST00000639659 STON1Q9Y6Q2 735 aa15.83■□□□□ 0.12
SYNE2-228ENST00000639659 A0A1W2PQH9 124 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 RARGP13631 454 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 P4HA1P13674 534 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 AFMP43652 599 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 SLC14A1Q13336 389 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 FOXD4L6Q3SYB3 417 aaPredicted RBP15.82■□□□□ 0.12
SYNE2-228ENST00000639659 FUT11Q495W5 492 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 FOXD4L5Q5VV16 416 aaPredicted RBP15.82■□□□□ 0.12
SYNE2-228ENST00000639659 SPOPLQ6IQ16 392 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 FOXD4L3Q6VB84 417 aaPredicted RBP15.82■□□□□ 0.12
SYNE2-228ENST00000639659 UNC13DQ70J99 1090 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 ADAMTS14Q8WXS8 1223 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 FOXD4L4Q8WXT5 416 aaPredicted RBP15.82■□□□□ 0.12
SYNE2-228ENST00000639659 NMUR1Q9HB89 426 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 IL21RQ9HBE5 538 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 CD248Q9HCU0 757 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 MARK1Q9P0L2 795 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 TFIP11Q9UBB9 837 aaKnown RBP15.82■□□□□ 0.12
SYNE2-228ENST00000639659 RASAL2Q9UJF2 1139 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 NAGPAQ9UK23 515 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 MTMR6Q9Y217 621 aa15.82■□□□□ 0.12
SYNE2-228ENST00000639659 ANKRD11Q6UB99 2663 aaPredicted RBP15.81■□□□□ 0.12
SYNE2-228ENST00000639659 A0A1B0GTW7 788 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 FAM92AA1XBS5 289 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 SYNCRIPO60506 623 aaKnown RBP15.81■□□□□ 0.12
SYNE2-228ENST00000639659 GREM1O60565 184 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 GJB3O75712 270 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 VNN1O95497 513 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 TRIM21P19474 475 aaKnown RBP15.81■□□□□ 0.12
SYNE2-228ENST00000639659 PIK3CAP42336 1068 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 NASPP49321 788 aaPredicted RBP15.81■□□□□ 0.12
SYNE2-228ENST00000639659 FASNP49327 2511 aaKnown RBP15.81■□□□□ 0.12
SYNE2-228ENST00000639659 CCDC157Q569K6 752 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 DCAF12L1Q5VU92 463 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 PDZD3Q86UT5 571 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 FAM124AQ86V42 546 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 LINC00301Q8NCQ3 95 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 HNRNPLLQ8WVV9 542 aaKnown RBP15.81■□□□□ 0.12
SYNE2-228ENST00000639659 GAREM1Q9H706 876 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 DNMT3LQ9UJW3 386 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 GPSM3Q9Y4H4 160 aa15.81■□□□□ 0.12
SYNE2-228ENST00000639659 ITPR1Q14643 2758 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 POLR2DO15514 142 aaKnown RBP15.8■□□□□ 0.12
SYNE2-228ENST00000639659 CISD3P0C7P0 127 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 ACADMP11310 421 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 IL12RB1P42701 662 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 SNRPFP62306 86 aaKnown RBP15.8■□□□□ 0.12
SYNE2-228ENST00000639659 DLG4P78352 724 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 KNOP1Q1ED39 458 aaKnown RBP15.8■□□□□ 0.12
SYNE2-228ENST00000639659 SLCO6A1Q86UG4 719 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 GRAMD1CQ8IYS0 662 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 PARD3BQ8TEW8 1205 aa15.8■□□□□ 0.12
SYNE2-228ENST00000639659 UCMAQ8WVF2 138 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms