RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PCDHGA12O60330 932 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 CACNG3O60359 315 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 YEATS4O95619 227 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 JUPP14923 745 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 TPMTP51580 245 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 AFF3P51826 1226 aaKnown RBP17.31■□□□□ 0.36
CLN3-264ENST00000637985 ALCAMQ13740 583 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 RTP5Q14D33 572 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 FUT11Q495W5 492 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 L1TD1Q5T7N2 865 aaKnown RBP17.31■□□□□ 0.36
CLN3-264ENST00000637985 TDRD10Q5VZ19 366 aaKnown RBP17.31■□□□□ 0.36
CLN3-264ENST00000637985 DPH6Q7L8W6 267 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 SCFD1Q8WVM8 642 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 KBTBD7Q8WVZ9 684 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 POMGNT1Q8WZA1 660 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 WBP1Q96G27 269 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 PCED1BQ96HM7 432 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 ACCSQ96QU6 501 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 PANK2Q9BZ23 570 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 LRRC27Q9C0I9 530 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 MKRN2Q9H000 416 aaKnown RBP17.31■□□□□ 0.36
CLN3-264ENST00000637985 PCDHGA1Q9Y5H4 931 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 SNX11Q9Y5W9 270 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 AK5Q9Y6K8 562 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 PTPN13Q12923 2485 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 A0A087X0B3 334 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 IGLV3-19P01714 112 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 HSP90AA1P07900 732 aaKnown RBP17.3■□□□□ 0.36
CLN3-264ENST00000637985 IDEP14735 1019 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 ADSSP30520 456 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 OXTRP30559 389 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 HNF1BP35680 557 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 CYP27A1Q02318 531 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 TLE3Q04726 772 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 CSGALNACT2Q8N6G5 542 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 CACTINQ8WUQ7 758 aaKnown RBP17.3■□□□□ 0.36
CLN3-264ENST00000637985 WBP2Q969T9 261 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 NRSN2Q9GZP1 204 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 TNMDQ9H2S6 317 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 TFIP11Q9UBB9 837 aaKnown RBP17.3■□□□□ 0.36
CLN3-264ENST00000637985 ITGA11Q9UKX5 1188 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 SLCO1B1Q9Y6L6 691 aa17.3■□□□□ 0.36
CLN3-264ENST00000637985 GCNT3O95395 438 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 ZSCAN22P10073 491 aaPredicted RBP17.29■□□□□ 0.36
CLN3-264ENST00000637985 RBP5P82980 135 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 CCDC65Q8IXS2 484 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 PDILTQ8N807 584 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 FAM181AQ8N9Y4 354 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 MYCBPAPQ8TBZ2 947 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 FGF11Q92914 225 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 IGSF8Q969P0 613 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 XPO6Q96QU8 1125 aaKnown RBP17.29■□□□□ 0.36
CLN3-264ENST00000637985 NUP58Q9BVL2 599 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 IKZF4Q9H2S9 585 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 CUEDC2Q9H467 287 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 TMEM30AQ9NV96 361 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 PANK4Q9NVE7 773 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 TBC1D7Q9P0N9 293 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 FTSJ1Q9UET6 329 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 SIX4Q9UIU6 781 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 STON1Q9Y6Q2 735 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 PIEZO2Q9H5I5 2752 aa17.29■□□□□ 0.36
CLN3-264ENST00000637985 B8ZZF3 427 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 NEDD8-MDP1E9PL57 170 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 CUTAO60888 179 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 LDHAP00338 332 aaKnown RBP17.28■□□□□ 0.36
CLN3-264ENST00000637985 KRT19P08727 400 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 CISD3P0C7P0 127 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 TYRP14679 529 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 GARTP22102 1010 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 CCT8P50990 548 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 CACNA2D1P54289 1103 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 CLDN6P56747 220 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 CXADRP78310 365 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 SRSF1Q07955 248 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLN3-264ENST00000637985 KCNA1Q09470 495 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 TARDBPQ13148 414 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLN3-264ENST00000637985 STARD3Q14849 445 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 TAF1BQ53T94 588 aaPredicted RBP17.28■□□□□ 0.36
CLN3-264ENST00000637985 HECTD3Q5T447 861 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 SNX30Q5VWJ9 437 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 OVCA2Q8WZ82 227 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 FAM84AQ96KN4 292 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 HNRNPABQ99729 332 aaKnown RBP17.28■□□□□ 0.36
CLN3-264ENST00000637985 BBS2Q9BXC9 721 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 PCED1AQ9H1Q7 454 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 OSGEPQ9NPF4 335 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 MARK1Q9P0L2 795 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 ANKRD6Q9Y2G4 727 aa17.28■□□□□ 0.36
CLN3-264ENST00000637985 MYLKQ15746 1914 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 COL5A1P20908 1838 aaPredicted RBP17.27■□□□□ 0.36
CLN3-264ENST00000637985 PYCARD-AS1I3L0S3 204 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 KCNK3O14649 394 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 PAPSS1O43252 624 aaPredicted RBP17.27■□□□□ 0.36
CLN3-264ENST00000637985 GREM1O60565 184 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 PDGFRBP09619 1106 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 CDK4P11802 303 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 YWHAQP27348 245 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 ZNF132P52740 706 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 AMPD3Q01432 767 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms