RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CDK18Q07002 472 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SYCP2LQ5T4T6 812 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SCYL2Q6P3W7 929 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 ZNF534Q76KX8 674 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 NRDE2Q9H7Z3 1164 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 NGRNQ9NPE2 291 aaKnown RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SMYD2Q9NRG4 433 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SIRPGQ9P1W8 387 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 AKT3Q9Y243 479 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 DERAQ9Y315 318 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 HEY1Q9Y5J3 304 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 OTOFQ9HC10 1997 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SPDYE5A6NIY4 337 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 FAM159BA6NKW6 160 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 PAPSS1O43252 624 aaPredicted RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 PTPN9P43378 593 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 GCLCP48506 637 aaPredicted RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SNX16P57768 344 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 MRPS5P82675 430 aaKnown RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 NAA25Q14CX7 972 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 DPYSL2Q16555 572 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 UNC5AQ6ZN44 842 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 CYS1Q717R9 158 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 ARCQ7LC44 396 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 CTAGE3PQ8IX95 158 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.24□□□□□ -0.292e-6■■■■■ 163.7
LINC00540-203ENST00000631321 RAB3IL1Q8TBN0 382 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 CENPIQ92674 756 aaPredicted RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 KIF12Q96FN5 646 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SIGLEC10Q96LC7 697 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 KCNK4Q9NYG8 393 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 GSC2O15499 205 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 KIF1CO43896 1103 aaKnown RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 VTNP04004 478 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 APRTP07741 180 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 ZFXP17010 805 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 DESP17661 470 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 GCKP35557 465 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 SCNN1AP37088 669 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 FAXCQ5TGI0 409 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 ARHGAP17Q68EM7 881 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 TTC8Q8TAM2 541 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 CCDC110Q8TBZ0 833 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 OXNAD1Q96HP4 312 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 EBNA1BP2Q99848 306 aaKnown RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 MRPL45Q9BRJ2 306 aaKnown RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 IQCGQ9H095 443 aaKnown RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 MMADHCQ9H3L0 296 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 DCLRE1BQ9H816 532 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 PLEKHA5Q9HAU0 1116 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 FBXO6Q9NRD1 293 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 DONSONQ9NYP3 566 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 KRT38O76015 456 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 LUC7L3O95232 432 aaKnown RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 MYL2P10916 166 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 NEFHP12036 1026 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 CYP2F1P24903 491 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 L1CAMP32004 1257 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 NR2C2P49116 596 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 OCRLQ01968 901 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 ZBTB16Q05516 673 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 MTHFD1LQ6UB35 978 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 TIFABQ6ZNK6 161 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 VPS52Q8N1B4 723 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 SHCBP1Q8NEM2 672 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 PPTC7Q8NI37 304 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 GSDMBQ8TAX9 411 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 KCNV2Q8TDN2 545 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 EMID1Q96A84 441 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 NAF1Q96HR8 494 aaKnown RBP13.23□□□□□ -0.29
LINC00540-203ENST00000631321 QKIQ96PU8 341 aaKnown RBP eCLIP13.23□□□□□ -0.298e-7■■■□□ 15.7
LINC00540-203ENST00000631321 PPP1R16BQ96T49 567 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 HESX1Q9UBX0 185 aa13.23□□□□□ -0.29
LINC00540-203ENST00000631321 ADM5C9JUS6 153 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 FCHO1O14526 889 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 ENTPD5O75356 428 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 METTL18O95568 372 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 CSH1P0DML2 217 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 CSH2P0DML3 217 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 CRHR1P34998 444 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 RPL34P49207 117 aaKnown RBP13.22□□□□□ -0.29
LINC00540-203ENST00000631321 SERPINB9P50453 376 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 PPIL2Q13356 520 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 SEMA5AQ13591 1074 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 TAF11Q15544 211 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 DCAF4L1Q3SXM0 396 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 HSF5Q4G112 596 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-203ENST00000631321 TEX44Q53QW1 395 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 ATG16L1Q676U5 607 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 TAPT1Q6NXT6 567 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 MAMDC4Q6UXC1 1216 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 ARMCX2Q7L311 632 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 ACOT1Q86TX2 421 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 UNC93AQ86WB7 457 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 SCUBE3Q8IX30 993 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 PRR11Q96HE9 360 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-203ENST00000631321 CLMNQ96JQ2 1002 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 XAB2Q9HCS7 855 aaKnown RBP13.22□□□□□ -0.29
LINC00540-203ENST00000631321 NME7Q9Y5B8 376 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 RBM47A0AV96 593 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms