RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SH3RF2Q8TEC5 729 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 CLEC4CQ8WTT0 213 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 RNF139Q8WU17 664 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 IRGQQ8WZA9 623 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 CPXM1Q96SM3 734 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 DDX23Q9BUQ8 820 aaKnown RBP18.95■□□□□ 0.62
CLN3-239ENST00000628023 RASAL2Q9UJF2 1139 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 NUDT5Q9UKK9 219 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 LUC7L2Q9Y383 392 aaKnown RBP18.95■□□□□ 0.62
CLN3-239ENST00000628023 VPS13AQ96RL7 3174 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 LAMTOR5O43504 91 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 GABBR2O75899 941 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 TPM1P09493 284 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 SP9P0CG40 484 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 IRF1P10914 325 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 CDH5P33151 784 aaPredicted RBP18.94■□□□□ 0.62
CLN3-239ENST00000628023 FMO1Q01740 532 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 GOLGA8FQ08AF8 430 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 GOLGA8DPQ0D2H9 430 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 TRIM14Q14142 442 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 MTF1Q14872 753 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 NAA35Q5VZE5 725 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 BSPRYQ5W0U4 402 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 ZNF852Q6ZMS4 543 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 TMEM110Q86TL2 294 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 EDEM1Q92611 657 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 TRIM62Q9BVG3 475 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 NUCKS1Q9H1E3 243 aaKnown RBP18.94■□□□□ 0.62
CLN3-239ENST00000628023 ABCC13Q9NSE7 274 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 SPATA6Q9NWH7 488 aaPredicted RBP18.94■□□□□ 0.62
CLN3-239ENST00000628023 DNMT3LQ9UJW3 386 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 R4GN57 208 aa18.94■□□□□ 0.62
CLN3-239ENST00000628023 SPTBN4Q9H254 2564 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 LEFTY2O00292 366 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 MDM4O15151 490 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 PAPSS1O43252 624 aaPredicted RBP18.93■□□□□ 0.62
CLN3-239ENST00000628023 TBX18O95935 607 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 LTFP02788 710 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 GYPCP04921 128 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 CHRNB2P17787 502 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 RPL34P49207 117 aaKnown RBP18.93■□□□□ 0.62
CLN3-239ENST00000628023 ZBED6P86452 979 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 FOXK2Q01167 660 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 EFEMP1Q12805 493 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 USP4Q13107 963 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 ZNF77Q15935 545 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 PTPN20Q4JDL3 420 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 ARHGAP29Q52LW3 1261 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 OR6B2Q6IFH4 312 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 TPRG1Q6ZUI0 275 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 BHLHA9Q7RTU4 235 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 ERICH1Q86X53 443 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 MIB1Q86YT6 1006 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 VSTM4Q8IW00 320 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 CPA5Q8WXQ8 436 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 DNASE1L2Q92874 299 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 IRF7Q92985 503 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 LRRC3BQ96PB8 259 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 AGPAT1Q99943 283 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 LTB4R2Q9NPC1 389 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 OLA1Q9NTK5 396 aaKnown RBP18.93■□□□□ 0.62
CLN3-239ENST00000628023 CFAP97Q9P2B7 532 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 TJP2Q9UDY2 1190 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 STRIP2Q9ULQ0 834 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 CAPN11Q9UMQ6 739 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 SH3BP1Q9Y3L3 701 aa18.93■□□□□ 0.62
CLN3-239ENST00000628023 MIA3Q5JRA6 1907 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 CAPN9O14815 690 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 ERBB2P04626 1255 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 GLULP15104 373 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 CASP14P31944 242 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 IFNAR2P48551 515 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 NOMO3P69849 1222 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 KLHL30Q0D2K2 578 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 FCHO2Q0JRZ9 810 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 TDRD12Q587J7 1177 aaKnown RBP18.92■□□□□ 0.62
CLN3-239ENST00000628023 KLHDC10Q6PID8 442 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 TOGARAM2Q6ZUX3 1019 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 FAM183BPQ6ZVS7 135 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 IRF2BP2Q7Z5L9 587 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 CSGALNACT1Q8TDX6 532 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 ZFYVE19Q96K21 471 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 AIPL1Q9NZN9 384 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 MARCH2Q9P0N8 246 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 FBXO4Q9UKT5 387 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 MYO15AQ9UKN7 3530 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 HELZP42694 1942 aaKnown RBP18.92■□□□□ 0.62
CLN3-239ENST00000628023 CACNA1IQ9P0X4 2223 aa18.92■□□□□ 0.62
CLN3-239ENST00000628023 MAN2B1O00754 1011 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 CHADO15335 359 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 TCF3P15923 654 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 TNFAIP3P21580 790 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 CD72P21854 359 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 NSFP46459 744 aaKnown RBP18.91■□□□□ 0.62
CLN3-239ENST00000628023 ZNF528Q3MIS6 628 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 E4F1Q66K89 784 aaPredicted RBP18.91■□□□□ 0.62
CLN3-239ENST00000628023 TMC6Q7Z403 805 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 ZNF276Q8N554 614 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 C18orf8Q96DM3 657 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 HINFPQ9BQA5 517 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms