RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DNAAF5Q86Y56 855 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 CCAR2Q8N163 923 aaKnown RBP13.36□□□□□ -0.27
UPF1-208ENST00000600012 FAM160A2Q8N612 972 aaPredicted RBP13.36□□□□□ -0.27
UPF1-208ENST00000600012 FAM83CQ9BQN1 747 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 SMG9Q9H0W8 520 aaKnown RBP13.36□□□□□ -0.27
UPF1-208ENST00000600012 KIF9Q9HAQ2 790 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 GKN1Q9NS71 199 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 C2orf42Q9NWW7 574 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 GDAP2Q9NXN4 497 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 TFR2Q9UP52 801 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 PCDHB5Q9Y5E4 795 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 EML5Q05BV3 1969 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 CCDC163A0A0D9SF12 145 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 HUS1O60921 280 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 IPO7O95373 1038 aaKnown RBP13.35□□□□□ -0.27
UPF1-208ENST00000600012 LCA5LO95447 670 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 F11P03951 625 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 CSH1P0DML2 217 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 CSH2P0DML3 217 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 HMGA1P17096 107 aaKnown RBP13.35□□□□□ -0.27
UPF1-208ENST00000600012 ANXA13P27216 316 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 BPIFB4P59827 614 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 AMPD2Q01433 879 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 GRSF1Q12849 480 aaKnown RBP eCLIP13.35□□□□□ -0.27
UPF1-208ENST00000600012 RUNX3Q13761 415 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 SPA17Q15506 151 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 NFE2Q16621 373 aaPredicted RBP13.35□□□□□ -0.27
UPF1-208ENST00000600012 TMEM196Q5HYL7 178 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 PPM1JQ5JR12 505 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 TMEM150AQ86TG1 271 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 VPS36Q86VN1 386 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 OSTM1Q86WC4 334 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 ADGRF2Q8IZF7 708 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 MAB21L3Q8N8X9 362 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 SLC4A11Q8NBS3 891 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 SLC30A5Q8TAD4 765 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 KBTBD7Q8WVZ9 684 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 DDX1Q92499 740 aaKnown RBP13.35□□□□□ -0.27
UPF1-208ENST00000600012 MRPS31Q92665 395 aaKnown RBP13.35□□□□□ -0.27
UPF1-208ENST00000600012 PPP1R13BQ96KQ4 1090 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 PCDHB18PQ96TA0 734 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 HPS4Q9NQG7 708 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 TDP1Q9NUW8 608 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 NENFQ9UMX5 172 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 PTPRDP23468 1912 aa13.35□□□□□ -0.27
UPF1-208ENST00000600012 TMCO5BA8MYB1 307 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 TRDMT1O14717 391 aaKnown RBP13.34□□□□□ -0.27
UPF1-208ENST00000600012 ZSCAN12O43309 604 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 ATG13O75143 517 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 TACC1O75410 805 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 CD19P15391 556 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 MAGEA1P43355 309 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 KRT83P78385 493 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 CDR2Q01850 454 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 ZNF268Q14587 947 aaPredicted RBP13.34□□□□□ -0.27
UPF1-208ENST00000600012 CCDC122Q5T0U0 273 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 FSTL4Q6MZW2 842 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 CC2D1AQ6P1N0 951 aaPredicted RBP13.34□□□□□ -0.27
UPF1-208ENST00000600012 LIMS2Q7Z4I7 341 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 KIAA1328Q86T90 577 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 MON1AQ86VX9 555 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 PASD1Q8IV76 773 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 REXO1L1PQ8IX06 675 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 PDCL2Q8N4E4 241 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 TOP6BLQ8N6T0 577 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 OR6B3Q8NGW1 331 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 GAB3Q8WWW8 586 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 TFAP2BQ92481 460 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 USP13Q92995 863 aaPredicted RBP13.34□□□□□ -0.27
UPF1-208ENST00000600012 TMEM176AQ96HP8 235 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 LOXL4Q96JB6 756 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 ZSWIM1Q9BR11 485 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 PACSIN1Q9BY11 444 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 SNX25Q9H3E2 840 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 EBF3Q9H4W6 596 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 ABCB6Q9NP58 842 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 TAS2R14Q9NYV8 317 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 UXTQ9UBK9 157 aaPredicted RBP13.34□□□□□ -0.27
UPF1-208ENST00000600012 NAGPAQ9UK23 515 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 SLC8A2Q9UPR5 921 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 CCL26Q9Y258 94 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 PCDHA13Q9Y5I0 950 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 ANAPC1Q9H1A4 1944 aa13.34□□□□□ -0.27
UPF1-208ENST00000600012 MAP1BP46821 2468 aaKnown RBP13.34□□□□□ -0.27
UPF1-208ENST00000600012 RCCD1A6NED2 376 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 A8MXQ7 604 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 RPP40O75818 363 aaKnown RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 PAEPP09466 180 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 WARSP23381 471 aaKnown RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 VAV2P52735 878 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 RPL10AP62906 217 aaKnown RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 PDGFRLQ15198 375 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 TXNDC8Q6A555 127 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 TRIM68Q6AZZ1 485 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 PKN3Q6P5Z2 889 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 ALKBH5Q6P6C2 394 aaKnown RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 ZNF677Q86XU0 584 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 TMEM86AQ8N2M4 240 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 TTC39CQ8N584 583 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 SPATA18Q8TC71 538 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms