RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PNPLA8Q9NP80 782 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 TLR8Q9NR97 1041 aaKnown RBP11.03□□□□□ -0.64
LIG1-213ENST00000596672 PLK2Q9NYY3 685 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 GMEB2Q9UKD1 530 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 SPEGQ15772 3267 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 ADAMTS9Q9P2N4 1935 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 A0A1W2PQF6 199 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 WASH3PC4AMC7 463 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 O00370 1275 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 GFRA2O00451 464 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 SLC9A3R1O14745 358 aaPredicted RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 ADH1CP00326 375 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 ATP5C1P36542 298 aaKnown RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 EIF2DP41214 584 aaKnown RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 GRIA2P42262 883 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 GAD2Q05329 585 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 LRRC63Q05C16 580 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 NFKBIBQ15653 356 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 GOLGA7BQ2TAP0 167 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 C10orf120Q5SQS8 335 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 TCERG1LQ5VWI1 586 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 EGFLAMQ63HQ2 1017 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 KLHL10Q6JEL2 608 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 KLHDC10Q6PID8 442 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 TPGS1Q6ZTW0 290 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 CACNA2D4Q7Z3S7 1137 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 DDX42Q86XP3 938 aaKnown RBP eCLIP11.02□□□□□ -0.65
LIG1-213ENST00000596672 IRF2BP1Q8IU81 584 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 TRIM59Q8IWR1 403 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 ZNF276Q8N554 614 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 RBBP8NLQ8NC74 664 aaPredicted RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 NELFBQ8WX92 580 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 BHMTQ93088 406 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 FAXDC2Q96IV6 333 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 ULBP1Q9BZM6 244 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 UBXN6Q9BZV1 441 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 RMND1Q9NWS8 449 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 MARK1Q9P0L2 795 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 TBC1D14Q9P2M4 693 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 ARMCX3Q9UH62 379 aaPredicted RBP11.02□□□□□ -0.65
LIG1-213ENST00000596672 NAGPAQ9UK23 515 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 FBXO10Q9UK96 956 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 TSPAN16Q9UKR8 245 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 SH3BP1Q9Y3L3 701 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 CHD6Q8TD26 2715 aa11.02□□□□□ -0.65
LIG1-213ENST00000596672 CKAP5Q14008 2032 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 YJEFN3A6XGL0 299 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 PATE3B3GLJ2 98 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 E7ENQ6 273 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 PIK3R2O00459 728 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 SLC30A4O14863 429 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 CACNG3O60359 315 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 LRP3O75074 770 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 SMC2O95347 1197 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 APODP05090 189 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 FYNP06241 537 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 HMBSP08397 361 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 TYRP14679 529 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 TKTL1P51854 596 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 DGKEP52429 567 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 ZNF132P52740 706 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 MRPS21P82921 87 aaKnown RBP11.01□□□□□ -0.65
LIG1-213ENST00000596672 EFEMP1Q12805 493 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 ANO4Q32M45 955 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 MAP7D1Q3KQU3 841 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 FYB2Q5VWT5 728 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 TERB1Q8NA31 727 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 TSTD1Q8NFU3 115 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 CLEC4CQ8WTT0 213 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 OTUB2Q96DC9 234 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 MYEOVQ96EZ4 313 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 DHTKD1Q96HY7 919 aaPredicted RBP11.01□□□□□ -0.65
LIG1-213ENST00000596672 CNOT6LQ96LI5 555 aaKnown RBP11.01□□□□□ -0.65
LIG1-213ENST00000596672 IMPG2Q9BZV3 1241 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 SLC6A17Q9H1V8 727 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 ACP6Q9NPH0 428 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 CLIC5Q9NZA1 410 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 DNMT3LQ9UJW3 386 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 AGO1Q9UL18 857 aaKnown RBP11.01□□□□□ -0.65
LIG1-213ENST00000596672 RAB23Q9ULC3 237 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 CTNND2Q9UQB3 1225 aa11.01□□□□□ -0.65
LIG1-213ENST00000596672 TBC1D3BA6NDS4 549 aa11□□□□□ -0.65
LIG1-213ENST00000596672 GOLGA6L4A6NEF3 574 aa11□□□□□ -0.65
LIG1-213ENST00000596672 NEDD8-MDP1E9PL57 170 aa11□□□□□ -0.65
LIG1-213ENST00000596672 PMM2O15305 246 aa11□□□□□ -0.65
LIG1-213ENST00000596672 PENKP01210 267 aaPredicted RBP11□□□□□ -0.65
LIG1-213ENST00000596672 ZNF806P0C7X5 589 aa11□□□□□ -0.65
LIG1-213ENST00000596672 CCDC192P0DO97 292 aa11□□□□□ -0.65
LIG1-213ENST00000596672 GABRG2P18507 467 aa11□□□□□ -0.65
LIG1-213ENST00000596672 BRD2P25440 801 aaKnown RBP11□□□□□ -0.65
LIG1-213ENST00000596672 P2RY2P41231 377 aa11□□□□□ -0.65
LIG1-213ENST00000596672 TNFRSF4P43489 277 aa11□□□□□ -0.65
LIG1-213ENST00000596672 PLA2G4AP47712 749 aa11□□□□□ -0.65
LIG1-213ENST00000596672 RGS7P49802 495 aa11□□□□□ -0.65
LIG1-213ENST00000596672 YWHAGP61981 247 aaKnown RBP eCLIP11□□□□□ -0.65
LIG1-213ENST00000596672 LMNB2Q03252 620 aa11□□□□□ -0.65
LIG1-213ENST00000596672 GEN1Q17RS7 908 aa11□□□□□ -0.65
LIG1-213ENST00000596672 C10orf76Q5T2E6 689 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms