RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 RASSF3Q86WH2 238 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 MIB1Q86YT6 1006 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 PPM1KQ8N3J5 372 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 TERB1Q8NA31 727 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 MDGA1Q8NFP4 955 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 KREMEN1Q96MU8 473 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 TPSD1Q9BZJ3 242 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 UBXN6Q9BZV1 441 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 DLL3Q9NYJ7 618 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 KIAA1468Q9P260 1216 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 DNMT3LQ9UJW3 386 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 LSM7Q9UK45 103 aaKnown RBP13.71□□□□□ -0.21
LIG1-212ENST00000596549 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.71□□□□□ -0.21
LIG1-212ENST00000596549 CACNA1AO00555 2505 aa13.71□□□□□ -0.21
LIG1-212ENST00000596549 CKAP5Q14008 2032 aa13.71□□□□□ -0.22
LIG1-212ENST00000596549 ADAM23O75077 832 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 GABBR2O75899 941 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 KLF8O95600 359 aaPredicted RBP13.7□□□□□ -0.22
LIG1-212ENST00000596549 CCDC192P0DO97 292 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 BRD2P25440 801 aaKnown RBP13.7□□□□□ -0.22
LIG1-212ENST00000596549 GRIA2P42262 883 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 ZNF132P52740 706 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 YWHAGP61981 247 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIG1-212ENST00000596549 MRPS21P82921 87 aaKnown RBP13.7□□□□□ -0.22
LIG1-212ENST00000596549 GOLGA8FQ08AF8 430 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 GOLGA8DPQ0D2H9 430 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 EFEMP1Q12805 493 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 ANO4Q32M45 955 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 PM20D1Q6GTS8 502 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 ANO7Q6IWH7 933 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 TPGS1Q6ZTW0 290 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 TOGARAM2Q6ZUX3 1019 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 RRAGAQ7L523 313 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 TXNDC5Q8NBS9 432 aaKnown RBP13.7□□□□□ -0.22
LIG1-212ENST00000596549 RBBP8NLQ8NC74 664 aaPredicted RBP13.7□□□□□ -0.22
LIG1-212ENST00000596549 TSTD1Q8NFU3 115 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 UBA3Q8TBC4 463 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 BBS2Q9BXC9 721 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 SRRTQ9BXP5 876 aaKnown RBP13.7□□□□□ -0.22
LIG1-212ENST00000596549 SEMA4GQ9NTN9 838 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 EBF1Q9UH73 591 aa13.7□□□□□ -0.22
LIG1-212ENST00000596549 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIG1-212ENST00000596549 CEP250Q9BV73 2442 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 DCLK1O15075 740 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 LRP3O75074 770 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 EPN2O95208 641 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 ZBED1O96006 694 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 AFPP02771 609 aaKnown RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 PAEPP09466 180 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 SETSIPP0DME0 302 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 RALAP11233 206 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 TYRP14679 529 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 CORO1AP31146 461 aaKnown RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 DGKEP52429 567 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 GCNT1Q02742 428 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 LMNB2Q03252 620 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 RSPO4Q2I0M5 234 aaPredicted RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 PLK5Q496M5 336 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 C10orf76Q5T2E6 689 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 BTBD8Q5XKL5 378 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 LCLAT1Q6UWP7 414 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 PRR23CQ6ZRP0 262 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 GPR161Q8N6U8 529 aaKnown RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 CNOT6LQ96LI5 555 aaKnown RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 INTS2Q9H0H0 1204 aaKnown RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 DUSP15Q9H1R2 295 aaPredicted RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 DNAJC17Q9NVM6 304 aaKnown RBP13.69□□□□□ -0.22
LIG1-212ENST00000596549 HESX1Q9UBX0 185 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 PCDHB4Q9Y5E5 795 aa13.69□□□□□ -0.22
LIG1-212ENST00000596549 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.69□□□□□ -0.22
LIG1-212ENST00000596549 YJEFN3A6XGL0 299 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 PRRT4C9JH25 899 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 E7ENQ6 273 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 M0QYV0 167 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 GNA14O95837 355 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 HMBSP08397 361 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 BCKDHBP21953 392 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 TNFRSF4P43489 277 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 SLC8A3P57103 927 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 DAOAP59103 153 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 CCDC6Q16204 474 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 CSRP2Q16527 193 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 FYB2Q5VWT5 728 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 EGFLAMQ63HQ2 1017 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 GRAMD4Q6IC98 578 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 CACNA2D4Q7Z3S7 1137 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 TADA2BQ86TJ2 420 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 IRF2BP1Q8IU81 584 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 ARHGAP18Q8N392 663 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 ZNF513Q8N8E2 541 aaPredicted RBP13.68□□□□□ -0.22
LIG1-212ENST00000596549 EHBP1Q8NDI1 1231 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 CCDC26Q8TAB7 109 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 SLC35F5Q8WV83 523 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 KCTD13Q8WZ19 329 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 BHMTQ93088 406 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 ZC3H10Q96K80 434 aaKnown RBP13.68□□□□□ -0.22
LIG1-212ENST00000596549 CDK5RAP1Q96SZ6 601 aaKnown RBP13.68□□□□□ -0.22
LIG1-212ENST00000596549 LRRC4Q9HBW1 653 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 PLK2Q9NYY3 685 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 MARCH2Q9P0N8 246 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms