RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TRIM9Q9C026 710 aa13.48□□□□□ -0.25
SS18-219ENST00000581570 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.48□□□□□ -0.253e-16■■■■■ 317.3
SS18-219ENST00000581570 COMMD8Q9NX08 183 aa13.48□□□□□ -0.25
SS18-219ENST00000581570 EIF2B4Q9UI10 523 aaKnown RBP13.48□□□□□ -0.25
SS18-219ENST00000581570 LSM7Q9UK45 103 aaKnown RBP13.48□□□□□ -0.25
SS18-219ENST00000581570 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.48□□□□□ -0.25
SS18-219ENST00000581570 GCN1Q92616 2671 aaKnown RBP13.48□□□□□ -0.25
SS18-219ENST00000581570 URB1O60287 2271 aaKnown RBP13.48□□□□□ -0.25
SS18-219ENST00000581570 IGSF10Q6WRI0 2623 aa13.48□□□□□ -0.25
SS18-219ENST00000581570 CELSR3Q9NYQ7 3312 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 ATP8B3O60423 1300 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 A0A1B0GVT2 93 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 KCNJ18B7U540 433 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 TNFSF14O43557 240 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 TLR5O60602 858 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 TBX18O95935 607 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 TPMTP51580 245 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 ZNF132P52740 706 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 SF3A1Q15459 793 aaKnown RBP13.47□□□□□ -0.25
SS18-219ENST00000581570 CCDC157Q569K6 752 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 RRAGBQ5VZM2 374 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 TMPRSS6Q8IU80 811 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 PIP4K2CQ8TBX8 421 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 SIPA1Q96FS4 1042 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 NUP58Q9BVL2 599 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 MKRN2Q9H000 416 aaKnown RBP13.47□□□□□ -0.25
SS18-219ENST00000581570 DMAP1Q9NPF5 467 aaPredicted RBP13.47□□□□□ -0.25
SS18-219ENST00000581570 BTBD3Q9Y2F9 522 aa13.47□□□□□ -0.25
SS18-219ENST00000581570 APC2O95996 2303 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 ACACAQ13085 2346 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 FAM92AA1XBS5 289 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 E9PAM4 449 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 C1QL1O75973 258 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 DLATP10515 647 aaKnown RBP13.46□□□□□ -0.25
SS18-219ENST00000581570 ACADMP11310 421 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 TNNI1P19237 187 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 GJB2P29033 226 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 CSNK1EP49674 416 aaKnown RBP13.46□□□□□ -0.25
SS18-219ENST00000581570 PGFP49763 221 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 GOLGA8FQ08AF8 430 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 GOLGA8DPQ0D2H9 430 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 SMAD1Q15797 465 aaKnown RBP13.46□□□□□ -0.25
SS18-219ENST00000581570 PAQR9Q6ZVX9 377 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 FAM35AQ86V20 835 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 C1orf216Q8TAB5 229 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 PRCCQ92733 491 aaPredicted RBP13.46□□□□□ -0.25
SS18-219ENST00000581570 BHMTQ93088 406 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 KIAA1586Q9HCI6 787 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 PANK4Q9NVE7 773 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 PLK2Q9NYY3 685 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 NXF1Q9UBU9 619 aaKnown RBP13.46□□□□□ -0.25
SS18-219ENST00000581570 FBXO10Q9UK96 956 aa13.46□□□□□ -0.25
SS18-219ENST00000581570 PTPRBP23467 1997 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 FRMD3A2A2Y4 597 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 NPC1O15118 1278 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 ATXN7O15265 892 aaPredicted RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 SYNCRIPO60506 623 aaKnown RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 HLA-EP13747 358 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 CD44P16070 742 aaKnown RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 ITPKBP27987 946 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 ATP5C1P36542 298 aaKnown RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 IL12RB1P42701 662 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 GRK6P43250 576 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 AFF3P51826 1226 aaKnown RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 TRPC3Q13507 836 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 KIF19Q2TAC6 998 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 DHRS13Q6UX07 377 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 RDH13Q8NBN7 331 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 ENGASEQ8NFI3 743 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 UCMAQ8WVF2 138 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 SNX19Q92543 992 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 SMARCD1Q96GM5 515 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 FBXO44Q9H4M3 255 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 TLR8Q9NR97 1041 aaKnown RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 HSPBP1Q9NZL4 362 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 THAP10Q9P2Z0 257 aaPredicted RBP13.45□□□□□ -0.26
SS18-219ENST00000581570 SNX11Q9Y5W9 270 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 ASXL3Q9C0F0 2248 aa13.45□□□□□ -0.26
SS18-219ENST00000581570 SETXQ7Z333 2677 aaKnown RBP13.44□□□□□ -0.26
SS18-219ENST00000581570 PLK4O00444 970 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 AP1G2O75843 785 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 STAU1O95793 577 aaKnown RBP13.44□□□□□ -0.26
SS18-219ENST00000581570 IGLV3-19P01714 112 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 PLA2G2AP14555 144 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 ACO1P21399 889 aaKnown RBP13.44□□□□□ -0.26
SS18-219ENST00000581570 CDH8P55286 799 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 MYL6P60660 151 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 ENPP2Q13822 863 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 TEAD4Q15561 434 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 PTPRNQ16849 979 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 LRRC69Q6ZNQ3 347 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 STXBP4Q6ZWJ1 553 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 ZNF605Q86T29 641 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 TMPRSS12Q86WS5 348 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 CCDC127Q96BQ5 260 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 TNIP3Q96KP6 325 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 CGRRF1Q99675 332 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 PCED1AQ9H1Q7 454 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 PRORYQ9H606 182 aa13.44□□□□□ -0.26
SS18-219ENST00000581570 SLC27A6Q9Y2P4 619 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms