RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LETM1O95202 739 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-206ENST00000579558 APODP05090 189 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 HMBSP08397 361 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 USP8P40818 1118 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 FNTBP49356 437 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 SEC13P55735 322 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 DAOAP59103 153 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 KDSRQ06136 332 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 MIIPQ5JXC2 388 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 HEATR6Q6AI08 1181 aaKnown RBP25.04■■□□□ 1.6
SHMT1-206ENST00000579558 Q6ZNB5 142 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 SCML4Q8N228 414 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 HSFY1Q96LI6 401 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 ARHGEF4Q9NR80 690 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 OLA1Q9NTK5 396 aaKnown RBP25.04■■□□□ 1.6
SHMT1-206ENST00000579558 NFE2L3Q9Y4A8 694 aa25.04■■□□□ 1.6
SHMT1-206ENST00000579558 SLC12A8A0AV02 714 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 YJEFN3A6XGL0 299 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 E7ENQ6 273 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 K7EQS6 105 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 PES1O00541 588 aaKnown RBP25.03■■□□□ 1.6
SHMT1-206ENST00000579558 THAP12O43422 761 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 MED7O43513 233 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 GABBR2O75899 941 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 GNA15P30679 374 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 BSPRYQ5W0U4 402 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 SASS6Q6UVJ0 657 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 NAT16Q8N8M0 369 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 ENOX1Q8TC92 643 aaKnown RBP25.03■■□□□ 1.6
SHMT1-206ENST00000579558 RNF139Q8WU17 664 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 ACDQ96AP0 544 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 SIX2Q9NPC8 291 aa25.03■■□□□ 1.6
SHMT1-206ENST00000579558 BECN2A8MW95 431 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 KAT7O95251 611 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 HOXA6P31267 233 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 HOXC13P31276 330 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 MESP2Q0VG99 397 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 TCP11X2Q5H9J9 407 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 DENND1BQ6P3S1 775 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 TPGS1Q6ZTW0 290 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 LONP2Q86WA8 852 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 ETFBKMTQ8IXQ9 262 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 SUMF1Q8NBK3 374 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 ZNF606Q8WXB4 792 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 SHC3Q92529 594 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 EDEM1Q92611 657 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 DCLK3Q9C098 648 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 EPC1Q9H2F5 836 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 ACP6Q9NPH0 428 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 POLR3BQ9NW08 1133 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-206ENST00000579558 ZNF510Q9Y2H8 683 aa25.02■■□□□ 1.6
SHMT1-206ENST00000579558 NEDD8-MDP1E9PL57 170 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 TULP3O75386 442 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 KLKB1P03952 638 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 EEF1GP26641 437 aaKnown RBP25.01■■□□□ 1.59
SHMT1-206ENST00000579558 CORO1AP31146 461 aaKnown RBP25.01■■□□□ 1.59
SHMT1-206ENST00000579558 GRIA2P42262 883 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 GPD2P43304 727 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 C2orf27AQ580R0 203 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 CCDC183Q5T5S1 534 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 SFTPA1Q8IWL2 248 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 USP33Q8TEY7 942 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 IRGQQ8WZA9 623 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 BBS2Q9BXC9 721 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 ST7Q9NRC1 585 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 ABCC13Q9NSE7 274 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 ANO10Q9NW15 660 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 WDR35Q9P2L0 1181 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 DEC1Q9P2X7 70 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 DNAJC12Q9UKB3 198 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 AJAP1Q9UKB5 411 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-206ENST00000579558 CFAP54Q96N23 3096 aa25.01■■□□□ 1.59
SHMT1-206ENST00000579558 FBXO21O94952 628 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 MEA1Q16626 185 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 PREPLQ4J6C6 727 aaPredicted RBP25■■□□□ 1.59
SHMT1-206ENST00000579558 SYT13Q7L8C5 426 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 FMNL3Q8IVF7 1028 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 CLEC4CQ8WTT0 213 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 PLD4Q96BZ4 506 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 MIS12Q9H081 205 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 MARK1Q9P0L2 795 aa25■■□□□ 1.59
SHMT1-206ENST00000579558 SMG5Q9UPR3 1016 aaKnown RBP25■■□□□ 1.59
SHMT1-206ENST00000579558 ANTXRLA6NF34 631 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 TYRP14679 529 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 PXNP49023 591 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-206ENST00000579558 DMC1Q14565 340 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 STX1AQ16623 288 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 C11orf57Q6ZUT1 292 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-206ENST00000579558 WDR5BQ86VZ2 330 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 PHTF2Q8N3S3 785 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 GOLGA1Q92805 767 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 XPO6Q96QU8 1125 aaKnown RBP24.99■■□□□ 1.59
SHMT1-206ENST00000579558 HHIPQ96QV1 700 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 HINFPQ9BQA5 517 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 DNAJC17Q9NVM6 304 aaKnown RBP24.99■■□□□ 1.59
SHMT1-206ENST00000579558 TAB2Q9NYJ8 693 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 SFMBT1Q9UHJ3 866 aa24.99■■□□□ 1.59
SHMT1-206ENST00000579558 RIF1Q5UIP0 2472 aaKnown RBP24.98■■□□□ 1.59
SHMT1-206ENST00000579558 A0A0A0MRY4 1105 aa24.98■■□□□ 1.59
SHMT1-206ENST00000579558 CACNG3O60359 315 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms