RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 THAP10Q9P2Z0 257 aaPredicted RBP17.27■□□□□ 0.36
VPS53-218ENST00000575207 GTF3C4Q9UKN8 822 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 SATB2Q9UPW6 733 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 PCDHGA8Q9Y5G5 932 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 MED13Q9UHV7 2174 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 MTORP42345 2549 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 FSBPO95073 299 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 DEXIO95424 95 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 IGHDP01880 384 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 TYRP14679 529 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 ACO1P21399 889 aaKnown RBP17.26■□□□□ 0.35
VPS53-218ENST00000575207 TXKP42681 527 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 DUSP3P51452 185 aaPredicted RBP17.26■□□□□ 0.35
VPS53-218ENST00000575207 TBR1Q16650 682 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 JADE1Q6IE81 842 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 CLEC14AQ86T13 490 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 PTRH1Q86Y79 214 aaKnown RBP17.26■□□□□ 0.35
VPS53-218ENST00000575207 SPATA2LQ8IUW3 424 aaPredicted RBP17.26■□□□□ 0.35
VPS53-218ENST00000575207 CD302Q8IX05 232 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 NSUN7Q8NE18 718 aaKnown RBP17.26■□□□□ 0.35
VPS53-218ENST00000575207 KMT5AQ9NQR1 393 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 GDF3Q9NR23 364 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 TMPRSS4Q9NRS4 437 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 EHD2Q9NZN4 543 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 MARK1Q9P0L2 795 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 SH3BP1Q9Y3L3 701 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 CKAP5Q14008 2032 aa17.26■□□□□ 0.35
VPS53-218ENST00000575207 KPNA7A9QM74 516 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 DGKGP49619 791 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 KYAT1Q16773 422 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 C3orf38Q5JPI3 329 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 CACUL1Q86Y37 369 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 DAW1Q8N136 415 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 SLC6A18Q96N87 628 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 AIFM3Q96NN9 605 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 TRIM9Q9C026 710 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 BTBD1Q9H0C5 482 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 ERVMER34-1Q9H9K5 563 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 ANO2Q9NQ90 1003 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.25■□□□□ 0.35
VPS53-218ENST00000575207 KCNJ14Q9UNX9 436 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 PDZD2O15018 2839 aa17.25■□□□□ 0.35
VPS53-218ENST00000575207 RP1L1Q8IWN7 2480 aaPredicted RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 A0A1W2PPC4 97 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 NEDD8-MDP1E9PL57 170 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 FAM189A1O60320 539 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 IGHV4-34P06331 123 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 HMGB1P09429 215 aaKnown RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 RPA1P27694 616 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 MLLT3P42568 568 aaPredicted RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 SSRP1Q08945 709 aaKnown RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 CCDC142Q17RM4 750 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 EARS2Q5JPH6 523 aaKnown RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 ZNF787Q6DD87 383 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 Q6ZUG5 572 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 GRAMD1AQ96CP6 724 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 NTPCRQ9BSD7 190 aaKnown RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 BBS2Q9BXC9 721 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 NCOA5Q9HCD5 579 aaKnown RBP17.24■□□□□ 0.35
VPS53-218ENST00000575207 WDR35Q9P2L0 1181 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 ANAPC2Q9UJX6 822 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 DERAQ9Y315 318 aa17.24■□□□□ 0.35
VPS53-218ENST00000575207 TCHHQ07283 1943 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 ABL1P00519 1130 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 CCT2P78371 535 aaKnown RBP17.23■□□□□ 0.35
VPS53-218ENST00000575207 STRN3Q13033 797 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 ZNF211Q13398 564 aaPredicted RBP17.23■□□□□ 0.35
VPS53-218ENST00000575207 ISXQ2M1V0 245 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 VSTM1Q6UX27 236 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 RASEFQ8IZ41 740 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 FBXL16Q8N461 479 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 OXR1Q8N573 874 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 HPS3Q969F9 1004 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 LHX5Q9H2C1 402 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 ADNPQ9H2P0 1102 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 DDX43Q9NXZ2 648 aaKnown RBP17.23■□□□□ 0.35
VPS53-218ENST00000575207 FBXO10Q9UK96 956 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 NAV3Q8IVL0 2385 aa17.23■□□□□ 0.35
VPS53-218ENST00000575207 A0A1W2PR77 199 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 TRIM38O00635 465 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 CYP26A1O43174 497 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 SIGLEC6O43699 453 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 ACAT1P24752 427 aaKnown RBP17.22■□□□□ 0.35
VPS53-218ENST00000575207 CD97P48960 835 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 NOP14P78316 857 aaKnown RBP17.22■□□□□ 0.35
VPS53-218ENST00000575207 CLCA4Q14CN2 919 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 ADGRF2Q8IZF7 708 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 PDCL2Q8N4E4 241 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 OR2T3Q8NH03 318 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 BHMT2Q9H2M3 363 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 C17orf75Q9HAS0 396 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 PLAAQ9Y263 795 aa17.22■□□□□ 0.35
VPS53-218ENST00000575207 PLXNA2O75051 1894 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 SLC16A4O15374 487 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 COCHO43405 550 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 MUTP22033 750 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 CD38P28907 300 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 CDH8P55286 799 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 DAB2P98082 770 aa17.21■□□□□ 0.35
VPS53-218ENST00000575207 TAF10Q12962 218 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms