RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NKD2Q969F2 451 aaPredicted RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 FAM149B1Q96BN6 582 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CDK5RAP1Q96SZ6 601 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 PKMYT1Q99640 499 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 TTPALQ9BTX7 342 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 OSBPL7Q9BZF2 842 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 TRIM7Q9C029 511 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 DDX47Q9H0S4 455 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 MTIF3Q9H2K0 278 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 ZWILCHQ9H900 591 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 NGRNQ9NPE2 291 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 ABCC13Q9NSE7 274 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RNF19AQ9NV58 838 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 AMACRQ9UHK6 382 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 NME7Q9Y5B8 376 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RAD54BQ9Y620 910 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 USP3Q9Y6I4 520 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 COL6A3P12111 3177 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CITO14578 2027 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 hCG_1818297A0A087WSY0 165 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 APOC4-APOC2K7ER74 178 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 ATP2C2O75185 946 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 MYCP01106 439 aaPredicted RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 APOC2P02655 101 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 SLC2A3P11169 496 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 IBSPP21815 317 aaPredicted RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 ACTN2P35609 894 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 FLT3P36888 993 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 GRIK1P39086 918 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 ARL4AP40617 200 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 HCAR3P49019 387 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 KPNA1P52294 538 aaPredicted RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 KRT17Q04695 432 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 ADIGQ0VDE8 80 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 XRCC4Q13426 336 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 PPIGQ13427 754 aaKnown RBP eCLIP8.3□□□□□ -1.084e-7■■□□□ 12.4
VPS39-213ENST00000570062 BYSLQ13895 437 aaKnown RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 HLTFQ14527 1009 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS39-213ENST00000570062 DPYSL2Q16555 572 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 PTPROQ16827 1216 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 HSP90B2PQ58FF3 399 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 EFHC2Q5JST6 749 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 FAM171A1Q5VUB5 890 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 TPGS2Q68CL5 300 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 DUPD1Q68J44 220 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 PTCRAQ6ISU1 281 aaPredicted RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 KIAA1841Q6NSI8 718 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 SCYL2Q6P3W7 929 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 FUT10Q6P4F1 479 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 GSTA5Q7RTV2 222 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 MON1AQ86VX9 555 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 JAMLQ86YT9 394 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 DEFB106AQ8N104 65 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 NUP93Q8N1F7 819 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 MREGQ8N565 214 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 EMC1Q8N766 993 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 IFT81Q8WYA0 676 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 P3H4Q92791 437 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 NTAN1Q96AB6 310 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 SCLYQ96I15 445 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 PAWRQ96IZ0 340 aaKnown RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 SPATA17Q96L03 361 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 ZNF558Q96NG5 402 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 PNKPQ96T60 521 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 NPY6RQ99463 290 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 SMOQ99835 787 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 RTP3Q9BQQ7 232 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 PAAF1Q9BRP4 392 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 C11orf84Q9BUA3 381 aaPredicted RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 PPP1R12CQ9BZL4 782 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 DCLK3Q9C098 648 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 BRD8Q9H0E9 1235 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 MED4Q9NPJ6 270 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS39-213ENST00000570062 OLA1Q9NTK5 396 aaKnown RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 OGFRQ9NZT2 677 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 WHRNQ9P202 907 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 DMGDHQ9UI17 866 aaKnown RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 TIMM13Q9Y5L4 95 aaPredicted RBP8.3□□□□□ -1.08
VPS39-213ENST00000570062 ANK1P16157 1881 aa8.3□□□□□ -1.08
VPS39-213ENST00000570062 H3BRJ5 948 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 TULP2O00295 520 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 CLDN5O00501 218 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 MAP2K7O14733 419 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 MCF2LO15068 1137 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 NCAM2O15394 837 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 TTI1O43156 1089 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SIAH2O43255 324 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 LIASO43766 372 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 OPA1O60313 960 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 LTFP02788 710 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 BDNFP23560 247 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 TKTP29401 623 aaKnown RBP8.29□□□□□ -1.08
VPS39-213ENST00000570062 PTGIRP43119 386 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 PPP3CCP48454 512 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 MARCKSL1P49006 195 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SLC11A1P49279 550 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SULT1E1P49888 294 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 CDH6P55285 790 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 BCAR1P56945 870 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms