RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 UPF3AQ9H1J1 476 aaKnown RBP13.76□□□□□ -0.21
VPS4A-204ENST00000566354 PTCH2Q9Y6C5 1203 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 TCRBV7S3A2A0A539 114 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 TTLL13PA6NNM8 815 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 GYG2O15488 501 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 TMEM63AO94886 807 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 INHAP05111 366 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 IL1R2P27930 398 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 ETV4P43268 484 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 YWHAEP62258 255 aaKnown RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 ZNF200P98182 395 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 CDK16Q00536 496 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 ZBTB16Q05516 673 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SLC18A2Q05940 514 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 PRKD1Q15139 912 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 DUOXA2Q1HG44 320 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 TBC1D25Q3MII6 688 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 KCNT1Q5JUK3 1230 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 APLFQ8IW19 511 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 UNC45BQ8IWX7 931 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 ARFGAP1Q8N6T3 406 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SKA1Q96BD8 255 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 APOPT1Q96IL0 206 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 MTMR12Q9C0I1 747 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 LHX5Q9H2C1 402 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 C12orf65Q9H3J6 166 aaKnown RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 KCNK13Q9HB14 408 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 ARL8BQ9NVJ2 186 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 AKT3Q9Y243 479 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 NRCAMQ92823 1304 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SCN10AQ9Y5Y9 1956 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 APOC4-APOC2K7ER74 178 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SPAG6O75602 509 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 APOC2P02655 101 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 DLDP09622 509 aaKnown RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SERPINB3P29508 390 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 CCNHP51946 323 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 NEK3P51956 506 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 C1QTNF8P60827 252 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 PTK7Q13308 1070 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 TRPC3Q13507 836 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 DPYSL3Q14195 570 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 MUM1Q2TAK8 710 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 APBB1IPQ7Z5R6 666 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 FAM71DQ8N9W8 422 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SLC44A1Q8WWI5 657 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 MMADHCQ9H3L0 296 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-204ENST00000566354 SPC25Q9HBM1 224 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 POLIQ9UNA4 740 aa13.75□□□□□ -0.21
VPS4A-204ENST00000566354 CSDE1O75534 798 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 WEE2P0C1S8 567 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 STIP1P31948 543 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 VHLP40337 213 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TNFSF9P41273 254 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 ELK3P41970 407 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 EIF3EP60228 445 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 BASP1P80723 227 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 SURF1Q15526 300 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 CCDC6Q16204 474 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 RFWD3Q6PCD5 774 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 DSTYKQ6XUX3 929 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 SH2D5Q6ZV89 423 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 KIAA0319LQ8IZA0 1049 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 KCTD6Q8NC69 237 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 CMASQ8NFW8 434 aaPredicted RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 JOSD2Q8TAC2 188 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 MCUR1Q96AQ8 359 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TCHPQ9BT92 498 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TMEM120AQ9BXJ8 343 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 FAM49AQ9H0Q0 323 aaPredicted RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 MINDY3Q9H8M7 445 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 ALG13Q9NP73 1137 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 WDR35Q9P2L0 1181 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 CHMP2BQ9UQN3 213 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 A0A087WZ62 844 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TCRBV9S1A1TA0A576 114 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 RRN3P2A6NIE6 340 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 KLF11O14901 512 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 MCF2LO15068 1137 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 NVLO15381 856 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TREHO43280 583 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 MED7O43513 233 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 FAM189A1O60320 539 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 MSCO60682 206 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TOM1L1O75674 476 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 INHBAP08476 426 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 LINGO3P0C6S8 592 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 RBP3P10745 1247 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 GRK4P32298 578 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 EFNA5P52803 228 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 ADAM17P78536 824 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 KLC1Q07866 573 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 LBRQ14739 615 aaKnown RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 ARHGEF6Q15052 776 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 PTPN20Q4JDL3 420 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 DENND1BQ6P3S1 775 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 RFX6Q8HWS3 928 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 VPS52Q8N1B4 723 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 ZNF333Q96JL9 665 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 SERAC1Q96JX3 654 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms