RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 LIMS2Q7Z4I7 341 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 METTL3Q86U44 580 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 FAM124AQ86V42 546 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 CACUL1Q86Y37 369 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 TMPRSS6Q8IU80 811 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 ZNF843Q8N446 348 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 LSM14AQ8ND56 463 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 SCAMP5Q8TAC9 235 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 OVCA2Q8WZ82 227 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 LARP4BQ92615 738 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 BHMTQ93088 406 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 SIPA1Q96FS4 1042 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 ZSCAN31Q96LW9 406 aaPredicted RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 MRPL45Q9BRJ2 306 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 NUP58Q9BVL2 599 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 MKRN2Q9H000 416 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 PRORYQ9H606 182 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.76□□□□□ -1.174e-8■■■■■ 131.6
VPS4A-203ENST00000564399 TMEM30AQ9NV96 361 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 INTS13Q9NVM9 706 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 USP36Q9P275 1121 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 LSM7Q9UK45 103 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 STON1Q9Y6Q2 735 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 TP53BP1Q12888 1972 aaPredicted RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 ARID1BQ8NFD5 2236 aaPredicted RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 CKAP5Q14008 2032 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 MUC22E2RYF6 1773 aaPredicted RBP7.75□□□□□ -1.17
VPS4A-203ENST00000564399 A8MXQ7 604 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 KCNJ18B7U540 433 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 KCNK3O14649 394 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 GCNT3O95395 438 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 HNF1BP35680 557 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 CCT8P50990 548 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 AFF3P51826 1226 aaKnown RBP7.75□□□□□ -1.17
VPS4A-203ENST00000564399 CFHR1Q03591 330 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 GOLGA8FQ08AF8 430 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 GOLGA8DPQ0D2H9 430 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 PTPRNQ16849 979 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 DUOXA2Q1HG44 320 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 INAVAQ3KP66 663 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 L1TD1Q5T7N2 865 aaKnown RBP7.75□□□□□ -1.17
VPS4A-203ENST00000564399 HTR3DQ70Z44 454 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 GPR155Q7Z3F1 870 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 TMPRSS12Q86WS5 348 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 GPD1LQ8N335 351 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 OR5B17Q8NGF7 314 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 UCMAQ8WVF2 138 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 PRCCQ92733 491 aaPredicted RBP7.75□□□□□ -1.17
VPS4A-203ENST00000564399 KCNK16Q96T55 309 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 DUSP9Q99956 384 aaKnown RBP7.75□□□□□ -1.17
VPS4A-203ENST00000564399 CBWD1Q9BRT8 395 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 MED10Q9BTT4 135 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 B3GNT5Q9BYG0 378 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 TRIM9Q9C026 710 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 DPEP3Q9H4B8 488 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 PLK2Q9NYY3 685 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 GMIPQ9P107 970 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 FTSJ1Q9UET6 329 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 PCDHB13Q9Y5F0 798 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 SNX11Q9Y5W9 270 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 ATP8B3O60423 1300 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 PTPRJQ12913 1337 aa7.75□□□□□ -1.17
VPS4A-203ENST00000564399 PTPN13Q12923 2485 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TEX51A0A1B0GUA7 166 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 CAPN8A6NHC0 703 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 ZNF233A6NK53 670 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TLX3O43711 291 aaPredicted RBP7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TLR5O60602 858 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TACC1O75410 805 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 PPP1R37O75864 691 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 CLSTN1O94985 981 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 CISD3P0C7P0 127 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 IDEP14735 1019 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 GAP43P17677 238 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 IL12RB1P42701 662 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TUBP50607 506 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 SLC5A3P53794 718 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 CDH8P55286 799 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 CLDN6P56747 220 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TNNC1P63316 161 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 IL9RQ01113 521 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 SURF1Q15526 300 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 WDR72Q3MJ13 1102 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 TAF1BQ53T94 588 aaPredicted RBP7.74□□□□□ -1.17
VPS4A-203ENST00000564399 SNX30Q5VWJ9 437 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 ADAT2Q7Z6V5 191 aaKnown RBP7.74□□□□□ -1.17
VPS4A-203ENST00000564399 B3GALNT2Q8NCR0 500 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 C1orf216Q8TAB5 229 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 BAP1Q92560 729 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 IGSF8Q969P0 613 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 ARID3AQ99856 593 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 STRA6Q9BX79 667 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 MARK1Q9P0L2 795 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 THAP10Q9P2Z0 257 aaPredicted RBP7.74□□□□□ -1.17
VPS4A-203ENST00000564399 SEL1LQ9UBV2 794 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 ANKRD6Q9Y2G4 727 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 KIF3AQ9Y496 699 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 NME7Q9Y5B8 376 aa7.74□□□□□ -1.17
VPS4A-203ENST00000564399 MGAQ8IWI9 3026 aa7.73□□□□□ -1.17
VPS4A-203ENST00000564399 H0Y8X5 98 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms