RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CPLX3Q8WVH0 158 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 PCED1BQ96HM7 432 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 EDEM2Q9BV94 578 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 GANQ9H2C0 597 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 FAM207AQ9NSI2 230 aaPredicted RBP14.8□□□□□ -0.04
LDLR-213ENST00000560502 TRPM5Q9NZQ8 1165 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 ASCC3Q8N3C0 2202 aaKnown RBP14.8□□□□□ -0.04
LDLR-213ENST00000560502 LNP1A1A4G5 178 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 ZNF840PA6NDX5 716 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 KIF2AO00139 706 aaPredicted RBP14.79□□□□□ -0.04
LDLR-213ENST00000560502 TRIM66O15016 1216 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 LAMA1P25391 3075 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 PON1P27169 355 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 PI4KAP42356 2102 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 DGKEP52429 567 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 AP3M2P53677 418 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 NOP14P78316 857 aaKnown RBP14.79□□□□□ -0.04
LDLR-213ENST00000560502 CLDN10P78369 228 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 FAM208BQ5VWN6 2430 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 C11orf74Q86VG3 221 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 CCDC170Q8IYT3 715 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 PARD3BQ8TEW8 1205 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 C8orf48Q96LL4 319 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 FAM81BQ96LP2 452 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 MRPL45Q9BRJ2 306 aaKnown RBP14.79□□□□□ -0.04
LDLR-213ENST00000560502 RNF38Q9H0F5 515 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 TMEM8AQ9HCN3 771 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 TMEM30AQ9NV96 361 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 MMP17Q9ULZ9 603 aa14.79□□□□□ -0.04
LDLR-213ENST00000560502 F8VP50 259 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 TACC1O75410 805 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 OAS1P00973 400 aaKnown RBP14.78□□□□□ -0.04
LDLR-213ENST00000560502 PDGFRBP09619 1106 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 HNRNPLP14866 589 aaKnown RBP eCLIP14.78□□□□□ -0.04
LDLR-213ENST00000560502 BCKDHBP21953 392 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 ANXA13P27216 316 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 GRIK1P39086 918 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 PPP3CCP48454 512 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 KLK7P49862 253 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 MXI1P50539 228 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 CYP27A1Q02318 531 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 C2orf27AQ580R0 203 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 KLHDC7AQ5VTJ3 777 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 KRT39Q6A163 491 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 PSAPL1Q6NUJ1 521 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 TRIM65Q6PJ69 517 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 TRAPPC11Q7Z392 1133 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 CCAR2Q8N163 923 aaKnown RBP14.78□□□□□ -0.04
LDLR-213ENST00000560502 OLIG1Q8TAK6 271 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 BAP1Q92560 729 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 TPSD1Q9BZJ3 242 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 EHD2Q9NZN4 543 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 COQ4Q9Y3A0 265 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 R3HCC1Q9Y3T6 440 aaKnown RBP14.78□□□□□ -0.04
LDLR-213ENST00000560502 CPQQ9Y646 472 aa14.78□□□□□ -0.04
LDLR-213ENST00000560502 GON4LQ3T8J9 2241 aa14.77□□□□□ -0.04
LDLR-213ENST00000560502 ZFHX4Q86UP3 3567 aa14.77□□□□□ -0.04
LDLR-213ENST00000560502 SSU72P8A0A1W2PR75 194 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 C4orf47A7E2U8 309 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 CCDC175P0C221 793 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 FAM163BP0C2L3 166 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 TRIM49P0CI25 452 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 TRIM49CP0CI26 452 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 UCHL3P15374 230 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 GBP1P32455 592 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 CYLC1P35663 651 aaPredicted RBP14.77□□□□□ -0.05
LDLR-213ENST00000560502 CACNA2D1P54289 1103 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 SEC13P55735 322 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 MRPS21P82921 87 aaKnown RBP14.77□□□□□ -0.05
LDLR-213ENST00000560502 MESP2Q0VG99 397 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 DHCR24Q15392 516 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 CRY1Q16526 586 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 USP39Q53GS9 565 aaKnown RBP14.77□□□□□ -0.05
LDLR-213ENST00000560502 MDH1BQ5I0G3 518 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 ANO7Q6IWH7 933 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 TMEM92Q6UXU6 159 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 SFTPA1Q8IWL2 248 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 ADGRG2Q8IZP9 1017 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 RDH13Q8NBN7 331 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 MDGA1Q8NFP4 955 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 FNBP1Q96RU3 617 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 INTS2Q9H0H0 1204 aaKnown RBP14.77□□□□□ -0.05
LDLR-213ENST00000560502 INVSQ9Y283 1065 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 BZW2Q9Y6E2 419 aaKnown RBP14.77□□□□□ -0.05
LDLR-213ENST00000560502 FRYQ5TBA9 3013 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 CFAP47Q6ZTR5 3102 aa14.77□□□□□ -0.05
LDLR-213ENST00000560502 CEP192Q8TEP8 1941 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 A0A0A0MRY4 1105 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 RNF225M0QZC1 329 aaPredicted RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 SLC9A3R1O14745 358 aaPredicted RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 EPHB6O15197 1021 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 IPO7O95373 1038 aaKnown RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 STAU1O95793 577 aaKnown RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 CST3P01034 146 aaPredicted RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 CCDC172P0C7W6 258 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 EIF2DP41214 584 aaKnown RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 POLR2FP61218 127 aaKnown RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 GOLGA8FQ08AF8 430 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 GOLGA8DPQ0D2H9 430 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 TAF10Q12962 218 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms