RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KIF5CO60282 957 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 RTN2O75298 545 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 PLEKP08567 350 aaPredicted RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 PDGFRBP09619 1106 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 RAD23BP54727 409 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 ARHGAP15Q53QZ3 475 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 WSCD1Q658N2 575 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 TOGARAM2Q6ZUX3 1019 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 WDR5BQ86VZ2 330 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 DCP1BQ8IZD4 617 aaKnown RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 CRYBG2Q8N1P7 616 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 CTNNBL1Q8WYA6 563 aaPredicted RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 CALR3Q96L12 384 aaKnown RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 SEPT5Q99719 369 aaPredicted RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 MRPL45Q9BRJ2 306 aaKnown RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 MED10Q9BTT4 135 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 RXFP3Q9NSD7 469 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 SPTLC3Q9NUV7 552 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 POLR3BQ9NW08 1133 aaPredicted RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 TRMT1Q9NXH9 659 aaKnown RBP12.4□□□□□ -0.42
LDLR-212ENST00000560467 CDH9Q9ULB4 789 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 INTUQ9ULD6 942 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 PYCARDQ9ULZ3 195 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 L1RE1Q9UN81 338 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 ADGRG1Q9Y653 693 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 CFAP47Q6ZTR5 3102 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 A0A087X0T9 212 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 TMCO5BA8MYB1 307 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 KIF2AO00139 706 aaPredicted RBP12.39□□□□□ -0.43
LDLR-212ENST00000560467 AXIN1O15169 862 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 LCA5LO95447 670 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 FTLP02792 175 aaPredicted RBP12.39□□□□□ -0.43
LDLR-212ENST00000560467 CYP11A1P05108 521 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 MMEP08473 750 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 FAM228BP0C875 321 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 MYBL1P10243 752 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 ATF6P18850 670 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 HOXA6P31267 233 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 ZNF132P52740 706 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 CYP27A1Q02318 531 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 MTF1Q14872 753 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 CNGA2Q16280 664 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 AASDHQ4L235 1098 aaPredicted RBP12.39□□□□□ -0.43
LDLR-212ENST00000560467 E4F1Q66K89 784 aaPredicted RBP12.39□□□□□ -0.43
LDLR-212ENST00000560467 ACOT1Q86TX2 421 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 KBTBD6Q86V97 674 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 CCAR2Q8N163 923 aaKnown RBP12.39□□□□□ -0.43
LDLR-212ENST00000560467 UBR7Q8N806 425 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 SLC4A11Q8NBS3 891 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 B3GALNT2Q8NCR0 500 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 BPIFB1Q8TDL5 484 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 ACBD6Q9BR61 282 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 DESI2Q9BSY9 194 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 LHX5Q9H2C1 402 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 ARRDC1-AS1Q9H2J1 176 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 SMOC1Q9H4F8 434 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 TASP1Q9H6P5 420 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 IL21Q9HBE4 155 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 OBP2AQ9NY56 170 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 NAGPAQ9UK23 515 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 NOCTQ9UK39 431 aaKnown RBP12.39□□□□□ -0.43
LDLR-212ENST00000560467 ASB3Q9Y575 518 aa12.39□□□□□ -0.43
LDLR-212ENST00000560467 FGF19O95750 216 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 DESP17661 470 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 PTPN1P18031 435 aaKnown RBP12.38□□□□□ -0.43
LDLR-212ENST00000560467 VAV2P52735 878 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 CLEC16AQ2KHT3 1053 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 ASTE1Q2TB18 679 aaPredicted RBP12.38□□□□□ -0.43
LDLR-212ENST00000560467 ITPRIPL2Q3MIP1 535 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 SLC39A12Q504Y0 691 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 IL31Q6EBC2 164 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 ACAD10Q6JQN1 1059 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 FSTL4Q6MZW2 842 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 C4orf50Q6ZRC1 276 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 ITIH5Q86UX2 942 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 ERICH1Q86X53 443 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 IPO4Q8TEX9 1081 aaKnown RBP12.38□□□□□ -0.43
LDLR-212ENST00000560467 GIPC2Q8TF65 315 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 SLC20A1Q8WUM9 679 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 GAB3Q8WWW8 586 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 CHFRQ96EP1 664 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 CYFIP2Q96F07 1278 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 VCPIP1Q96JH7 1222 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 SLC46A2Q9BY10 475 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 ELOVL4Q9GZR5 314 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 SDCBP2Q9H190 292 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 STRIP2Q9ULQ0 834 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 PCDHGC3Q9UN70 934 aa12.38□□□□□ -0.43
LDLR-212ENST00000560467 ANKRD62A6NC57 917 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 OTOL1A6NHN0 477 aaPredicted RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 M0QYV0 167 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 DDX3XO00571 662 aaKnown RBP eCLIP12.37□□□□□ -0.43
LDLR-212ENST00000560467 GABRDO14764 452 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 RPP40O75818 363 aaKnown RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 EPN2O95208 641 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 CALB1P05937 261 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 SETSIPP0DME0 302 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 BRD2P25440 801 aaKnown RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 PMLP29590 882 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 CDC25CP30307 473 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms