RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FAM72CH0Y354 149 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 CDH16O75309 829 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 AP1G2O75843 785 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 ENDOD1O94919 500 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 METTL18O95568 372 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 THP07101 528 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 AXLP30530 894 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 FAM72AQ5TYM5 149 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 OTUD1Q5VV17 481 aaPredicted RBP11.52□□□□□ -0.57
CUX1-212ENST00000547394 FAM72DQ6L9T8 149 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 TAOK1Q7L7X3 1001 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 FAM72BQ86X60 149 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 PALM2Q8IXS6 379 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 MICALL1Q8N3F8 863 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 TTC13Q8NBP0 860 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 DEPDC1BQ8WUY9 529 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 CABS1Q96KC9 395 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 CSPG4P5Q96PW8 444 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 ROPN1BQ9BZX4 212 aaPredicted RBP11.52□□□□□ -0.57
CUX1-212ENST00000547394 SENP6Q9GZR1 1112 aaPredicted RBP11.52□□□□□ -0.57
CUX1-212ENST00000547394 ROPN1Q9HAT0 212 aaPredicted RBP11.52□□□□□ -0.57
CUX1-212ENST00000547394 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.52□□□□□ -0.573e-6■■■■□ 19.4
CUX1-212ENST00000547394 SHOC2Q9UQ13 582 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 NOD1Q9Y239 953 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 DCAF8L1A6NGE4 600 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 I6L893 689 aaPredicted RBP11.52□□□□□ -0.57
CUX1-212ENST00000547394 ALOX15BO15296 676 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 OR4Q2P0C623 313 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 NPR3P17342 541 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 STILQ15468 1287 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 BOLA3Q53S33 107 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 XKR4Q5GH76 650 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 MFSD14CQ5VZR4 134 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 NUGGCQ68CJ6 796 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 TAF2Q6P1X5 1199 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 KCNT2Q6UVM3 1135 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 SLC26A9Q7LBE3 791 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 PRPF39Q86UA1 669 aaKnown RBP11.52□□□□□ -0.57
CUX1-212ENST00000547394 MAP7D3Q8IWC1 876 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 SIX6OS1Q8N1H7 587 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 SLC7A14Q8TBB6 771 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 FAXDC2Q96IV6 333 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 ADAM2Q99965 735 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 TSPYL1Q9H0U9 437 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 PIGVQ9NUD9 493 aa11.52□□□□□ -0.57
CUX1-212ENST00000547394 KBTBD13C9JR72 458 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 B4GALT3O60512 393 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 FCGRTP55899 365 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 ARL4CP56559 192 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 CORO7P57737 925 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 GJA9P57773 515 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 DENND5BQ6ZUT9 1274 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 UNC5BQ8IZJ1 945 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 MPP5Q8N3R9 675 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 MAML1Q92585 1016 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 TNIP3Q96KP6 325 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 SMOQ99835 787 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 SYT15Q9BQS2 421 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 DUSP16Q9BY84 665 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 ETNK1Q9HBU6 452 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 IL1RAPL1Q9NZN1 696 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 SLC17A6Q9P2U8 582 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 GRID1Q9ULK0 1009 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 TMEM88BA6NKF7 163 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 XPOTO43592 962 aaKnown RBP11.51□□□□□ -0.57
CUX1-212ENST00000547394 UGT1A9O60656 530 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 BDNFP23560 247 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 HOXC8P31273 242 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 RPA3P35244 121 aaPredicted RBP11.51□□□□□ -0.57
CUX1-212ENST00000547394 TFDP2Q14188 446 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 STAT4Q14765 748 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 TTC39CQ8N584 583 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 OTUD6BQ8N6M0 293 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 ZMIZ2Q8NF64 920 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 CCHCR1Q8TD31 782 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 CCDC77Q9BR77 488 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 TRPV6Q9H1D0 765 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 TRABDQ9H4I3 376 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 UGT1A7Q9HAW7 530 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 UGT1A10Q9HAW8 530 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 UGT1A8Q9HAW9 530 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 TMLHEQ9NVH6 421 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 RABGEF1Q9UJ41 708 aa11.51□□□□□ -0.57
CUX1-212ENST00000547394 ZNF638Q14966 1978 aaKnown RBP11.51□□□□□ -0.57
CUX1-212ENST00000547394 CAPN9O14815 690 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 CA12O43570 354 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 MFSD11O43934 449 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 KIAA0754O94854 1291 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 IGHA2P01877 340 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 FOXN2P32314 431 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 PNPLA4P41247 253 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 PGFP49763 221 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 WDR4P57081 412 aaKnown RBP11.5□□□□□ -0.57
CUX1-212ENST00000547394 YWHAZP63104 245 aaKnown RBP11.5□□□□□ -0.57
CUX1-212ENST00000547394 ACAP1Q15027 740 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 SDHAF4Q5VUM1 108 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 SERINC5Q86VE9 423 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 CACNA2D3Q8IZS8 1091 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 PDIK1LQ8N165 341 aa11.5□□□□□ -0.57
CUX1-212ENST00000547394 NME8Q8N427 588 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms