RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 HOXC11O43248 304 aaPredicted RBP12.44□□□□□ -0.42
YBX3-217ENST00000546164 SART1O43290 800 aaKnown RBP12.44□□□□□ -0.42
YBX3-217ENST00000546164 THAP12O43422 761 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 STC2O76061 302 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 TPM2P07951 284 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 SP9P0CG40 484 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 IRF1P10914 325 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 UCHL3P15374 230 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 PTMSP20962 102 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 OPRD1P41143 372 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 ACADSBP45954 432 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 RGS7P49802 495 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 CCR3P51677 355 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 PTK2Q05397 1052 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 LY6G5CQ5SRR4 150 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 BSPRYQ5W0U4 402 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 BTBD8Q5XKL5 378 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 DENND1BQ6P3S1 775 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 ANKRD20A12PQ8NF67 263 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 NDRG1Q92597 394 aaKnown RBP12.44□□□□□ -0.42
YBX3-217ENST00000546164 NELL1Q92832 810 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 SLC4A5Q9BY07 1137 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 VPS16Q9H269 839 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 FBRSL1Q9HCM7 1045 aaKnown RBP12.44□□□□□ -0.42
YBX3-217ENST00000546164 ACP6Q9NPH0 428 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 ABCC13Q9NSE7 274 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 MARK1Q9P0L2 795 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 MARCH2Q9P0N8 246 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 STRIP2Q9ULQ0 834 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 PCDHGC3Q9UN70 934 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 DAAM1Q9Y4D1 1078 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 WDR87Q6ZQQ6 2873 aa12.44□□□□□ -0.42
YBX3-217ENST00000546164 LGALS16A8MUM7 142 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 CHURC1-FNTBB4DL54 471 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 EGFP01133 1207 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 ADH5P11766 374 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 TDGF1P13385 188 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 LCP1P13796 627 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 CLCN1P35523 988 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 USP8P40818 1118 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 COPB1P53618 953 aaKnown RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 BPIFB4P59827 614 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 GAD2Q05329 585 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 EFEMP1Q12805 493 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 DRAP1Q14919 205 aaPredicted RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 ANO6Q4KMQ2 910 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 FKBP15Q5T1M5 1219 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 NAIF1Q69YI7 327 aaPredicted RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 MSANTD2Q6P1R3 559 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 Q6ZS52 159 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 RSRC2Q7L4I2 434 aaKnown RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 BEND5Q7L4P6 421 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 APTXQ7Z2E3 356 aaKnown RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 TMEM110Q86TL2 294 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 MIB1Q86YT6 1006 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 ETFBKMTQ8IXQ9 262 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 CCDC26Q8TAB7 109 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 EZH1Q92800 747 aaPredicted RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 FUCA2Q9BTY2 467 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 LSM14BQ9BX40 385 aaKnown RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 FAM126AQ9BYI3 521 aaPredicted RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 DCLK3Q9C098 648 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 LHX5Q9H2C1 402 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 SPHK2Q9NRA0 654 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 FAM86C1Q9NVL1 165 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 RASAL2Q9UJF2 1139 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 ZNF510Q9Y2H8 683 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 HBS1LQ9Y450 684 aaKnown RBP12.43□□□□□ -0.42
YBX3-217ENST00000546164 FHOD1Q9Y613 1164 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 USP34Q70CQ2 3546 aa12.43□□□□□ -0.42
YBX3-217ENST00000546164 GPR179Q6PRD1 2367 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 A0A0A0MRY4 1105 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.42□□□□□ -0.42
YBX3-217ENST00000546164 KLKB1P03952 638 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 CXCL12P48061 93 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 PDCLQ13371 301 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 PPP2R5DQ14738 602 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 TRIP4Q15650 581 aaPredicted RBP12.42□□□□□ -0.42
YBX3-217ENST00000546164 TMEM25Q86YD3 366 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 WDTC1Q8N5D0 677 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 ZBTB44Q8NCP5 570 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 RNF139Q8WU17 664 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 PLD4Q96BZ4 506 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 PHOX2BQ99453 314 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 STK33Q9BYT3 514 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 GANQ9H2C0 597 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 SEMA4AQ9H3S1 761 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 CYTH4Q9UIA0 394 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 SIK3Q9Y2K2 1263 aa12.42□□□□□ -0.42
YBX3-217ENST00000546164 SLC12A8A0AV02 714 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 F8VZ95 297 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 PAPSS1O43252 624 aaPredicted RBP12.41□□□□□ -0.42
YBX3-217ENST00000546164 ATG13O75143 517 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 RNF40O75150 1001 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 LTFP02788 710 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 PNMA6AP0CW24 399 aaPredicted RBP12.41□□□□□ -0.42
YBX3-217ENST00000546164 HOXA6P31267 233 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 SATB1Q01826 763 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 CSTF1Q05048 431 aaKnown RBP12.41□□□□□ -0.42
YBX3-217ENST00000546164 RAPGEF1Q13905 1077 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms