RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 EXOC3L4Q17RC7 722 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 ZC2HC1CQ53FD0 456 aaPredicted RBP5.46□□□□□ -1.53
USP28-213ENST00000544967 FAM26FQ5R3K3 315 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 TMEM63BQ5T3F8 832 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 IL23RQ5VWK5 629 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 RFWD3Q6PCD5 774 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 OTOAQ7RTW8 1153 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 ANKRD33Q7Z3H0 272 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 REXO1Q8N1G1 1221 aaKnown RBP5.46□□□□□ -1.53
USP28-213ENST00000544967 DEPTORQ8TB45 409 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 DNAJC19Q96DA6 116 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 UROC1Q96N76 676 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 RIT2Q99578 217 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 MXRA8Q9BRK3 442 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 ANO3Q9BYT9 981 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 CCDC113Q9H0I3 377 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 EHMT1Q9H9B1 1298 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 S100A14Q9HCY8 104 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 HOMER2Q9NSB8 354 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 KCNK4Q9NYG8 393 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 GGT7Q9UJ14 662 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 VAV3Q9UKW4 847 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 CDH7Q9ULB5 785 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 B3GNT3Q9Y2A9 372 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 R3HDM2Q9Y2K5 976 aaKnown RBP5.46□□□□□ -1.53
USP28-213ENST00000544967 NEU2Q9Y3R4 380 aa5.46□□□□□ -1.53
USP28-213ENST00000544967 FAM32AQ9Y421 112 aaKnown RBP5.46□□□□□ -1.53
USP28-213ENST00000544967 BAZ2BQ9UIF8 2168 aaKnown RBP5.46□□□□□ -1.53
USP28-213ENST00000544967 COL1A2P08123 1366 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CAPN14A8MX76 684 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 GOLGA8TH3BQL2 631 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PDXKO00764 312 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 FAM189A1O60320 539 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 SGPL1O95470 568 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CBX6O95503 412 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 NR3C2P08235 984 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 DHRS4L1P0CG22 281 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 VCLP18206 1134 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 GRIA2P42262 883 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CASP2P42575 452 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CDK9P50750 372 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 UBXN2AP68543 259 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 COASYQ13057 564 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 ZNF423Q2M1K9 1284 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PLEKHG4Q58EX7 1191 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 COL13A1Q5TAT6 717 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 TTC27Q6P3X3 843 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 NEK8Q86SG6 692 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 RASSF3Q86WH2 238 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 LINC01465Q8N7H1 131 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 ANKRD42Q8N9B4 389 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 TRIM11Q96F44 468 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PNMA5Q96PV4 448 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 HAUS8Q9BT25 410 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 KLC2Q9H0B6 622 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PRO3102Q9H379 93 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 AGO4Q9HCK5 861 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 BMP2KQ9NSY1 1161 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 C6orf203Q9P0P8 240 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 MAGED1Q9Y5V3 778 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 AK5Q9Y6K8 562 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 MICAL3Q7RTP6 2002 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 GBF1Q92538 1859 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 SMCO2A6NFE2 343 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 EML1O00423 815 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 THAP12O43422 761 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CALUO43852 315 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 SNX2O60749 519 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 TRMUO75648 421 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 PSMD10O75832 226 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CABYRO75952 493 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PDE5AO76074 875 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 FARP2O94887 1054 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 UPP2O95045 317 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 STBD1O95210 358 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 F2P00734 622 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 ESRRAP11474 423 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 GZMAP12544 262 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PRKAR2AP13861 404 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 SMPD1P17405 629 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 POU3F3P20264 500 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 TNFAIP3P21580 790 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PGM1P36871 562 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CCNFP41002 786 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 SLC1A1P43005 524 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 NEK3P51956 506 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PFKPQ01813 784 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 ZBTB17Q13105 803 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PDK3Q15120 406 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 STXBP2Q15833 593 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 ECM1Q16610 540 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 CELF3Q5SZQ8 465 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 OGFRL1Q5TC84 451 aaPredicted RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 THOC7Q6I9Y2 204 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 KLHDC10Q6PID8 442 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 RTL10Q7L3V2 364 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 LILRB2Q8N423 598 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 ZCCHC9Q8N567 271 aaKnown RBP5.46□□□□□ -1.54
USP28-213ENST00000544967 MINDY2Q8NBR6 621 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 GLG1Q92896 1179 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms