RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 RASGRF2O14827 1237 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 HGSO14964 777 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-210ENST00000538120 AGTP01019 485 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 PECAM1P16284 738 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-210ENST00000538120 TFE3P19532 575 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-210ENST00000538120 BDNFP23560 247 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 IL4RP24394 825 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 MLH1P40692 756 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 ATP11AP98196 1134 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 CDO1Q16878 200 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 C6orf118Q5T5N4 469 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 KIAA0319Q5VV43 1072 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 RSPH3Q86UC2 560 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 CACTIN-AS1Q8N1I8 211 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 BBOF1Q8ND07 529 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 GAD1Q99259 594 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 C11orf84Q9BUA3 381 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-210ENST00000538120 SPC25Q9HBM1 224 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 CHST12Q9NRB3 414 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 CTNNAL1Q9UBT7 734 aa11.19□□□□□ -0.62
CLIP1-210ENST00000538120 A8MUI8 341 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 CYB561D2O14569 222 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 GABRDO14764 452 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 HUS1O60921 280 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ELNP15502 786 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ZNF16P17020 682 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 SLC8A1P32418 973 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 BCAT1P54687 386 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 GDF10P55107 478 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 DPYSL3Q14195 570 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 TNFAIP8L3Q5GJ75 292 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 WSCD1Q658N2 575 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 AGMOQ6ZNB7 445 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 EP400NLQ6ZTU2 488 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 NUDT18Q6ZVK8 323 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 PAQR9Q6ZVX9 377 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 RFX6Q8HWS3 928 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ZDHHC17Q8IUH5 632 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 KIF2BQ8N4N8 673 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 FAM172AQ8WUF8 416 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 PRCCQ92733 491 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 THOC1Q96FV9 657 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 TACO1Q9BSH4 297 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 FRMD8P1Q9BZ68 369 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 FGFR1OP2Q9NVK5 253 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 NINJ2Q9NZG7 142 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 TCP11X1B4DZS4 312 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 SNX3O60493 162 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 MGEA5O60502 916 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 AOC2O75106 756 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ACSL3O95573 720 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 TTC4O95801 387 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ALDH1A1P00352 501 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 CLNS1AP54105 237 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 CDH6P55285 790 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 HDAC4P56524 1084 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 GPS1Q13098 491 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 KYNUQ16719 465 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 CA9Q16790 459 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ZC3H12AQ5D1E8 599 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 SLC26A9Q7LBE3 791 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 MRPL10Q7Z7H8 261 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 C11orf96Q7Z7L8 435 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 METTL3Q86U44 580 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 TAX1BP1Q86VP1 789 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 RELL1Q8IUW5 271 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 ZCCHC9Q8N567 271 aaKnown RBP11.18□□□□□ -0.62
CLIP1-210ENST00000538120 B3GALNT2Q8NCR0 500 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 CCHCR1Q8TD31 782 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 AGAP11Q8TF27 550 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 GPATCH2LQ9NWQ4 482 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 CENPFP49454 3210 aa11.18□□□□□ -0.62
CLIP1-210ENST00000538120 APOC4-APOC2K7ER74 178 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 APOC2P02655 101 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 FAM163BP0C2L3 166 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 LCP1P13796 627 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 ACAT1P24752 427 aaKnown RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 NCALDP61601 193 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 PLCB3Q01970 1234 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 RNASEH2BQ5TBB1 312 aaKnown RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 NPNTQ6UXI9 565 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 UNC45BQ8IWX7 931 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 NSMCE1Q8WV22 266 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CENPIQ92674 756 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 HNRNPABQ99729 332 aaKnown RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CALN1Q9BXU9 219 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CCDC134Q9H6E4 229 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 RSAD1Q9HA92 442 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 PCDH9Q9HC56 1237 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CYLDQ9NQC7 956 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 TRIM33Q9UPN9 1127 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 ARL5CA6NH57 179 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 SGK1O00141 431 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CLDN5O00501 218 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 PRPSAP2O60256 369 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 BEST1O76090 585 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 GSTA1P08263 222 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 PTPN1P18031 435 aaKnown RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 PAX7P23759 505 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms