RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ZCCHC6Q5VYS8 1495 aaKnown RBP2.96□□□□□ -1.94
SKA3-207ENST00000536239 TULP2O00295 520 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 GABRDO14764 452 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 PLAUP00749 431 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 CGAP01215 116 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 HSD3B2P26439 372 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 CALRP27797 417 aaKnown RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 PRKAR1BP31321 381 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 MAP2K1Q02750 393 aaPredicted RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 ZKSCAN8Q15776 578 aaPredicted RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 KRT71Q3SY84 523 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 PLA1AQ53H76 456 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 OTUD3Q5T2D3 398 aaPredicted RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 USP45Q70EL2 814 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 OTUD6BQ8N6M0 293 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 CELF5Q8N6W0 485 aaKnown RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 C12orf76Q8N812 135 aaPredicted RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 JPH3Q8WXH2 748 aaPredicted RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 EDC3Q96F86 508 aaKnown RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 MYCBPQ99417 103 aaPredicted RBP2.95□□□□□ -1.94
SKA3-207ENST00000536239 TM2D2Q9BX73 214 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 TERF2IPQ9NYB0 399 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 MSRB1Q9NZV6 116 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 KIF3AQ9Y496 699 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 CEP83Q9Y592 693 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 NINLQ9Y2I6 1382 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 SCN5AQ14524 2016 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 PEG3Q9GZU2 1588 aa2.95□□□□□ -1.94
SKA3-207ENST00000536239 LOC105378220A0A1B0GUY1 285 aaPredicted RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 PLEKHD1A6NEE1 506 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 GOLIM4O00461 696 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 FYB1O15117 783 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 KIF1CO43896 1103 aaKnown RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 ZC3H11AO75152 810 aaKnown RBP eCLIP2.94□□□□□ -1.94
SKA3-207ENST00000536239 FRAT2O75474 233 aaPredicted RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 ZNF432O94892 652 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 CCDC172P0C7W6 258 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 RHCEP18577 417 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 HOXA11P31270 313 aaPredicted RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 MLH1P40692 756 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 KCNJ4P48050 445 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 ENTPD1P49961 510 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 TIRAPP58753 221 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 GABPB1Q06547 395 aaPredicted RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 PTGR1Q14914 329 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 ODF3L2Q3SX64 289 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 CCDC157Q569K6 752 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 NADSYN1Q6IA69 706 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 ZSCAN30Q86W11 494 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 NBPF5PQ86XG9 351 aaPredicted RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 DDX42Q86XP3 938 aaKnown RBP eCLIP2.94□□□□□ -1.94
SKA3-207ENST00000536239 CREBRFQ8IUR6 639 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 SPARTQ8N0X7 666 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 NGEFQ8N5V2 710 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 SLC15A4Q8N697 577 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 DNAJC5GQ8N7S2 189 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 SLC44A5Q8NCS7 719 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 MNS1Q8NEH6 495 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 TIGD1Q96MW7 591 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 VN1R3Q9BXE9 311 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 RBM38Q9H0Z9 239 aaKnown RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 MLXIPLQ9NP71 852 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 PLSCR4Q9NRQ2 329 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 CGNQ9P2M7 1197 aaKnown RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 ICAM5Q9UMF0 924 aa2.94□□□□□ -1.94
SKA3-207ENST00000536239 SIRT4Q9Y6E7 314 aaPredicted RBP2.94□□□□□ -1.94
SKA3-207ENST00000536239 RNF123Q5XPI4 1314 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 A0A087WWL8 130 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 UQCRHLA0A096LP55 91 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 TRBV5-3A0A0A0MS03 114 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 A0A1W2PPC1 479 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 TLDC2A0PJX2 215 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 RRHO14718 337 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 AKAP10O43572 662 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 ZNF500O60304 480 aaPredicted RBP2.93□□□□□ -1.94
SKA3-207ENST00000536239 PAPSS2O95340 614 aaPredicted RBP2.93□□□□□ -1.94
SKA3-207ENST00000536239 UQCRHP07919 91 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 MSNP26038 577 aaKnown RBP2.93□□□□□ -1.94
SKA3-207ENST00000536239 EPHA3P29320 983 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 UQCRC1P31930 480 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 MCM5P33992 734 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 BECN1Q14457 450 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 KPNB1Q14974 876 aaKnown RBP2.93□□□□□ -1.94
SKA3-207ENST00000536239 LMO3Q8TAP4 145 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 OIT3Q8WWZ8 545 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 MSI2Q96DH6 328 aaKnown RBP2.93□□□□□ -1.94
SKA3-207ENST00000536239 WDYHV1Q96HA8 205 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 NCAPGQ9BPX3 1015 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 NUAK2Q9H093 628 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 TRIM36Q9NQ86 728 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 SMC4Q9NTJ3 1288 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 ZSCAN32Q9NX65 697 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 WNT16Q9UBV4 365 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 CKAP5Q14008 2032 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 PRDM2Q13029 1718 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 UNC13AQ9UPW8 1703 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 RAD50Q92878 1312 aa2.93□□□□□ -1.94
SKA3-207ENST00000536239 LOC102724159A0A0B4J2E5 919 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 F8W810 466 aa2.92□□□□□ -1.94
SKA3-207ENST00000536239 ATG13O75143 517 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms