RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	PCDHGA4	Q9Y5G9	962 aa		12.21	□□□□□ -0.45
CTNND1-238	ENST00000534647	THADA	Q6YHU6	1953 aa		12.21	□□□□□ -0.46
CTNND1-238	ENST00000534647	FAM208B	Q5VWN6	2430 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647		A0A1W2PQF6	199 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	FAM221B	A6H8Z2	402 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	SCAMP3	O14828	347 aa	Known RBP	12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	CACNG3	O60359	315 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	EXOC3	O60645	756 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	PHACTR2	O75167	634 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZNF217	O75362	1048 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	RPN1	P04843	607 aa	Known RBP	12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	GABRG2	P18507	467 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	ITPKA	P23677	461 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	CDH8	P55286	799 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	DNM1	Q05193	864 aa	Known RBP	12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	KDSR	Q06136	332 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	HNRNPD	Q14103	355 aa	Known RBP	12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	NR6A1	Q15406	480 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	KLHL40	Q2TBA0	621 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	UAP1L1	Q3KQV9	507 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZNF667	Q5HYK9	610 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	KLHDC10	Q6PID8	442 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	UNC93A	Q86WB7	457 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	SLC9A9	Q8IVB4	645 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	NELFCD	Q8IXH7	590 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	DEFB124	Q8NES8	71 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZMIZ2	Q8NF64	920 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	PLEKHO2	Q8TD55	490 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	TAF4B	Q92750	862 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	KLF16	Q9BXK1	252 aa	Predicted RBP	12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	SCAND2P	Q9GZW5	306 aa	Predicted RBP	12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	CAPN10	Q9HC96	672 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	CYLD	Q9NQC7	956 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	DMAC2	Q9NW81	257 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	WDR35	Q9P2L0	1181 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	CFAP45	Q9UL16	551 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647	FRY	Q5TBA9	3013 aa		12.2	□□□□□ -0.46
CTNND1-238	ENST00000534647		H0Y626	953 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	GFRA2	O00451	464 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	TRIM16	O95361	564 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	VNN1	O95497	513 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	GCGR	P47871	477 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	GFPT1	Q06210	699 aa	Predicted RBP	12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZNF33A	Q06730	810 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	IFRD2	Q12894	506 aa	Predicted RBP	12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	NCOA4	Q13772	614 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	SGSM1	Q2NKQ1	1148 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZNF699	Q32M78	642 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	C10orf76	Q5T2E6	689 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	ATL3	Q6DD88	541 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	PGBD3	Q8N328	593 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZNF276	Q8N554	614 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	NAT16	Q8N8M0	369 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	WBP2	Q969T9	261 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	SMO	Q99835	787 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	GABRG3	Q99928	467 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	MED10	Q9BTT4	135 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	SMYD3	Q9H7B4	428 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	TLR8	Q9NR97	1041 aa	Known RBP	12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	GMIP	Q9P107	970 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	MSRB2	Q9Y3D2	182 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	PLXND1	Q9Y4D7	1925 aa		12.19	□□□□□ -0.46
CTNND1-238	ENST00000534647	IGF2R	P11717	2491 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	IGHV1OR15-9	A0A0B4J2B8	117 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647		A0A1W2PQD8	194 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ARHGAP33	O14559	1287 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	IKBKB	O14920	756 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	POLR2D	O15514	142 aa	Known RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZBTB24	O43167	697 aa	Predicted RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	TLR5	O60602	858 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	TOP3B	O95985	862 aa	Known RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	P4HA1	P13674	534 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	HOXB2	P14652	356 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	SPINK2	P20155	84 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ATP5C1	P36542	298 aa	Known RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	CASP4	P49662	377 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	GUCA2A	Q02747	115 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	RPL6	Q02878	288 aa	Known RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	SLC14A1	Q13336	389 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	BIRC3	Q13489	604 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ANO4	Q32M45	955 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZACN	Q401N2	412 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	GRAMD4	Q6IC98	578 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	SDE2	Q6IQ49	451 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ARMCX6	Q7L4S7	300 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ACOT1	Q86TX2	421 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	MIB1	Q86YT6	1006 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZNF419	Q96HQ0	510 aa	Predicted RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	XPO6	Q96QU8	1125 aa	Known RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	SDCBP2	Q9H190	292 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	PNPLA8	Q9NP80	782 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	SLC39A2	Q9NP94	309 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ZDHHC4	Q9NPG8	344 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	KRT82	Q9NSB4	513 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	DNAAF2	Q9NVR5	837 aa	Known RBP	12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	CALCOCO1	Q9P1Z2	691 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	FBXO10	Q9UK96	956 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	SCML2	Q9UQR0	700 aa		12.18	□□□□□ -0.46
CTNND1-238	ENST00000534647	ASCC3	Q8N3C0	2202 aa	Known RBP	12.18	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms