RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 POLIQ9UNA4 740 aa14.73□□□□□ -0.05
USP48-213ENST00000529637 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 CCDC160A6NGH7 325 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 PIK3R2O00459 728 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 AVILO75366 819 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 CSDE1O75534 798 aaKnown RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 TOP3BO95985 862 aaKnown RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 TNNC2P02585 160 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 CDH8P55286 799 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 PSMC1P62191 440 aaKnown RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 TMPRSS15P98073 1019 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 CCNIQ14094 377 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 MAP7Q14244 749 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 ACBD5Q5T8D3 534 aaPredicted RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 FAM91A1Q658Y4 838 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 ABTB1Q969K4 478 aaPredicted RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 ALKBH8Q96BT7 664 aaKnown RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 GCNAQ96QF7 691 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 CALN1Q9BXU9 219 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 MIS12Q9H081 205 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 USP29Q9HBJ7 922 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 ZDHHC7Q9NXF8 308 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 A0A0J9YVX5 310 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 CST8O60676 142 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 TFAP2AP05549 437 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 KRT3P12035 628 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 RFC1P35251 1148 aaPredicted RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 IGBP1P78318 339 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 KLHL38Q2WGJ6 581 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 GADL1Q6ZQY3 521 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 TMEM130Q8N3G9 435 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 NAT8LQ8N9F0 302 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 SNRNP27Q8WVK2 155 aaKnown RBP14.72□□□□□ -0.05
USP48-213ENST00000529637 HSPH1Q92598 858 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 SLC13A1Q9BZW2 595 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 KCNK4Q9NYG8 393 aa14.72□□□□□ -0.05
USP48-213ENST00000529637 TCRBV9S1A1TA0A576 114 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 PCSK6P29122 969 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 HPCAP84074 193 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 LAMTOR4Q0VGL1 99 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 GK3PQ14409 553 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 TRIP10Q15642 601 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 DENND1BQ6P3S1 775 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 WDR49Q8IV35 697 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 ACTL9Q8TC94 416 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 CNKSR2Q8WXI2 1034 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 MMP19Q99542 508 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 KLHL4Q9C0H6 718 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 PCDH9Q9HC56 1237 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 GPAMQ9HCL2 828 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 CAPN8A6NHC0 703 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 OGTO15294 1046 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 RPL22P35268 128 aaKnown RBP14.71□□□□□ -0.05
USP48-213ENST00000529637 OTUD4Q01804 1114 aaKnown RBP14.71□□□□□ -0.05
USP48-213ENST00000529637 TBL3Q12788 808 aaKnown RBP14.71□□□□□ -0.05
USP48-213ENST00000529637 PIGHQ14442 188 aaPredicted RBP14.71□□□□□ -0.05
USP48-213ENST00000529637 CHI3L2Q15782 390 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 EFHC1Q5JVL4 640 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 PPP1R2P3Q6NXS1 205 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 SEPT1Q8WYJ6 367 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 PRICKLE1Q96MT3 831 aaPredicted RBP14.71□□□□□ -0.05
USP48-213ENST00000529637 PPCSQ9HAB8 311 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 CYP4F11Q9HBI6 524 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 DNAJB4Q9UDY4 337 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 AFG3L2Q9Y4W6 797 aa14.71□□□□□ -0.05
USP48-213ENST00000529637 hCG_1818297A0A087WSY0 165 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 C15orf38-AP3S2A0A0A6YYH1 394 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 FARP2O94887 1054 aaPredicted RBP14.71□□□□□ -0.06
USP48-213ENST00000529637 ELK3P41970 407 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 CHN2P52757 468 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 BASP1P80723 227 aaKnown RBP14.71□□□□□ -0.06
USP48-213ENST00000529637 FOLH1Q04609 750 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 SLC18A2Q05940 514 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 TLR1Q15399 786 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 DRICH1Q6PGQ1 229 aaPredicted RBP14.71□□□□□ -0.06
USP48-213ENST00000529637 KLHDC10Q6PID8 442 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 DENND5BQ6ZUT9 1274 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 ARPINQ7Z6K5 226 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 RFX6Q8HWS3 928 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 TRPM4Q8TD43 1214 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 DGCR14Q96DF8 476 aaKnown RBP14.71□□□□□ -0.06
USP48-213ENST00000529637 PCYT2Q99447 389 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 UBAP1Q9NZ09 502 aa14.71□□□□□ -0.06
USP48-213ENST00000529637 DRG1Q9Y295 367 aaKnown RBP14.71□□□□□ -0.06
USP48-213ENST00000529637 TMCC1O94876 653 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 PIGRP01833 764 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 ATP6V1B1P15313 513 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 POLR2BP30876 1174 aaKnown RBP14.7□□□□□ -0.06
USP48-213ENST00000529637 GALK1P51570 392 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 EFNA5P52803 228 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 MRPS5P82675 430 aaKnown RBP14.7□□□□□ -0.06
USP48-213ENST00000529637 ENPEPQ07075 957 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 HIC1Q14526 733 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 HADHQ16836 314 aaKnown RBP14.7□□□□□ -0.06
USP48-213ENST00000529637 DNAL1Q4LDG9 190 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 TCHHL1Q5QJ38 904 aaPredicted RBP14.7□□□□□ -0.06
USP48-213ENST00000529637 TREML2Q5T2D2 321 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 PPIL6Q8IXY8 311 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 JOSD2Q8TAC2 188 aa14.7□□□□□ -0.06
USP48-213ENST00000529637 KLRG1Q96E93 195 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms