RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SYCP1Q15431 976 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 PPP1R26Q5T8A7 1209 aaPredicted RBP10.68□□□□□ -0.7
VPS28-204ENST00000526054 ARHGAP17Q68EM7 881 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 GJB7Q6PEY0 223 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 SYT13Q7L8C5 426 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 APTXQ7Z2E3 356 aaKnown RBP10.68□□□□□ -0.7
VPS28-204ENST00000526054 SHC3Q92529 594 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 EZH1Q92800 747 aaPredicted RBP10.68□□□□□ -0.7
VPS28-204ENST00000526054 ERGIC2Q96RQ1 377 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 PLCB1Q9NQ66 1216 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 TRPM5Q9NZQ8 1165 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 HESX1Q9UBX0 185 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 PCDHGA5Q9Y5G8 931 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 CHD8Q9HCK8 2581 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 RTN3O95197 1032 aaPredicted RBP10.67□□□□□ -0.7
VPS28-204ENST00000526054 UCHL3P15374 230 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 PFKLP17858 780 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 USP8P40818 1118 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 ZNF132P52740 706 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 USP46P62068 366 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 APBA1Q02410 837 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 STILQ15468 1287 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 ELF2Q15723 593 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 GOLGA7BQ2TAP0 167 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 PLK5Q496M5 336 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 KLHDC7AQ5VTJ3 777 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 PAQR9Q6ZVX9 377 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 NUP93Q8N1F7 819 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 TSTD1Q8NFU3 115 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 NEK11Q8NG66 645 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 CCDC26Q8TAB7 109 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 ZC3H10Q96K80 434 aaKnown RBP10.67□□□□□ -0.7
VPS28-204ENST00000526054 DUSP16Q9BY84 665 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 SMOC1Q9H4F8 434 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 PNPLA8Q9NP80 782 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 RTN4Q9NQC3 1192 aaKnown RBP10.67□□□□□ -0.7
VPS28-204ENST00000526054 FAM207AQ9NSI2 230 aaPredicted RBP10.67□□□□□ -0.7
VPS28-204ENST00000526054 CNTN6Q9UQ52 1028 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 SIK3Q9Y2K2 1263 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 FHOD1Q9Y613 1164 aa10.67□□□□□ -0.7
VPS28-204ENST00000526054 A0A1B0GTH6 734 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 LEFTY2O00292 366 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 O00370 1275 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 MED7O43513 233 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 ABL1P00519 1130 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 TPM3P06753 285 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 BRD2P25440 801 aaKnown RBP10.66□□□□□ -0.7
VPS28-204ENST00000526054 GNA15P30679 374 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 GBP1P32455 592 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 PPP3CCP48454 512 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 DGKEP52429 567 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 CACNA2D1P54289 1103 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 BCAT1P54687 386 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 SEC13P55735 322 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 MAP3K7CLP57077 242 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 FANCCQ00597 558 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 IFRD2Q12894 506 aaPredicted RBP10.66□□□□□ -0.7
VPS28-204ENST00000526054 PLA2G2CQ5R387 149 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 DPY19L2P1Q6NXN4 242 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 CLEC20AQ6ZU45 233 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 ANKRD52Q8NB46 1076 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 SLITRK1Q96PX8 696 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 KCNK16Q96T55 309 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 SMOQ99835 787 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 TTLL2Q9BWV7 592 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 STK33Q9BYT3 514 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 GANQ9H2C0 597 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 LINC00597Q9H2U6 94 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 CSNK1G1Q9HCP0 422 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 VPS45Q9NRW7 570 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 RXFP3Q9NSD7 469 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 TMEM30AQ9NV96 361 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 COMMD8Q9NX08 183 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 SMPD4Q9NXE4 827 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 EBF1Q9UH73 591 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 AJAP1Q9UKB5 411 aaPredicted RBP10.66□□□□□ -0.7
VPS28-204ENST00000526054 TSPAN16Q9UKR8 245 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 CPQQ9Y646 472 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 NUP205Q92621 2012 aa10.66□□□□□ -0.7
VPS28-204ENST00000526054 KMT2BQ9UMN6 2715 aaPredicted RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 A0A1W2PQC6 194 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 ZNF840PA6NDX5 716 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 M0QYV0 167 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 RNF225M0QZC1 329 aaPredicted RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 SLC9A3R1O14745 358 aaPredicted RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 SCAMP3O14828 347 aaKnown RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 DCLK1O15075 740 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 THAP12O43422 761 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 RHOBTB1O94844 696 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 OLFM2O95897 454 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 OAS1P00973 400 aaKnown RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 CYP17A1P05093 508 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 SETSIPP0DME0 302 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 YWHAQP27348 245 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 OPRD1P41143 372 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 KLK7P49862 253 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 SLC5A3P53794 718 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 UBASH3AP57075 661 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 BPIFB4P59827 614 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 POLR2FP61218 127 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms