RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 MESP2Q0VG99 397 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 VWA3BQ502W6 1294 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 C2orf27AQ580R0 203 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 BSPRYQ5W0U4 402 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 TPGS1Q6ZTW0 290 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 BHLHA9Q7RTU4 235 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 LONP2Q86WA8 852 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 RNF139Q8WU17 664 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 NDST4Q9H3R1 872 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 CNGB3Q9NQW8 809 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 ARHGEF4Q9NR80 690 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 APEX2Q9UBZ4 518 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 RIF1Q5UIP0 2472 aaKnown RBP21.91■■□□□ 1.1
VPS28-203ENST00000524521 PTPRZ1P23471 2315 aaPredicted RBP21.91■■□□□ 1.1
VPS28-203ENST00000524521 SLC12A8A0AV02 714 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.9■■□□□ 1.1
VPS28-203ENST00000524521 KCNJ18B7U540 433 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 PES1O00541 588 aaKnown RBP21.9■■□□□ 1.1
VPS28-203ENST00000524521 HOXC11O43248 304 aaPredicted RBP21.9■■□□□ 1.1
VPS28-203ENST00000524521 GABBR2O75899 941 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 HOXA6P31267 233 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 PXNP49023 591 aaPredicted RBP21.9■■□□□ 1.1
VPS28-203ENST00000524521 DAOAP59103 153 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 KCNJ12Q14500 433 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 Q6ZNB5 142 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 USP33Q8TEY7 942 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 EDEM1Q92611 657 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 HSFY1Q96LI6 401 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 HINFPQ9BQA5 517 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 DCLK3Q9C098 648 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 ABCC13Q9NSE7 274 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 OLA1Q9NTK5 396 aaKnown RBP21.9■■□□□ 1.1
VPS28-203ENST00000524521 ZNF510Q9Y2H8 683 aa21.9■■□□□ 1.1
VPS28-203ENST00000524521 ANTXRLA6NF34 631 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 NEDD8-MDP1E9PL57 170 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 THAP12O43422 761 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 MED7O43513 233 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 TULP3O75386 442 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 KLKB1P03952 638 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 GRIA2P42262 883 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 MIIPQ5JXC2 388 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 SASS6Q6UVJ0 657 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 RBM43Q6ZSC3 357 aaKnown RBP21.89■■□□□ 1.09
VPS28-203ENST00000524521 SYT13Q7L8C5 426 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 SFTPA1Q8IWL2 248 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 SCML4Q8N228 414 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 ZNF606Q8WXB4 792 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 ACDQ96AP0 544 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 BBS2Q9BXC9 721 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 EPC1Q9H2F5 836 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 ACP6Q9NPH0 428 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 ST7Q9NRC1 585 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 WDR35Q9P2L0 1181 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 DEC1Q9P2X7 70 aa21.89■■□□□ 1.09
VPS28-203ENST00000524521 A0A0A0MRY4 1105 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 TBC1D3BA6NDS4 549 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 BECN2A8MW95 431 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 HRO43593 1189 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 GNA15P30679 374 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 CORO1AP31146 461 aaKnown RBP21.88■■□□□ 1.09
VPS28-203ENST00000524521 GPD2P43304 727 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 DMC1Q14565 340 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 DENND1BQ6P3S1 775 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 FMNL3Q8IVF7 1028 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 ETFBKMTQ8IXQ9 262 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 ENOX1Q8TC92 643 aaKnown RBP21.88■■□□□ 1.09
VPS28-203ENST00000524521 RUBCNQ92622 972 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 XPO6Q96QU8 1125 aaKnown RBP21.88■■□□□ 1.09
VPS28-203ENST00000524521 MIS12Q9H081 205 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 SIX2Q9NPC8 291 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 SFMBT1Q9UHJ3 866 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 DNAJC12Q9UKB3 198 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 SMG5Q9UPR3 1016 aaKnown RBP21.88■■□□□ 1.09
VPS28-203ENST00000524521 NFE2L3Q9Y4A8 694 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 FAM186AA6NE01 2351 aa21.88■■□□□ 1.09
VPS28-203ENST00000524521 MBD3O95983 291 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 TYRP14679 529 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 TIE1P35590 1138 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 TNFRSF4P43489 277 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 MRPS21P82921 87 aaKnown RBP21.87■■□□□ 1.09
VPS28-203ENST00000524521 SRSF5Q13243 272 aaKnown RBP21.87■■□□□ 1.09
VPS28-203ENST00000524521 PREPLQ4J6C6 727 aaPredicted RBP21.87■■□□□ 1.09
VPS28-203ENST00000524521 TCP11X2Q5H9J9 407 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 EMC10Q5UCC4 262 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 PRR23BQ6ZRT6 265 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 WDR5BQ86VZ2 330 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 DENND1CQ8IV53 801 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 PHTF2Q8N3S3 785 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 DCLK2Q8N568 766 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 CCDC33Q8N5R6 958 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 CAMKK1Q8N5S9 505 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 CLEC4CQ8WTT0 213 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 IRGQQ8WZA9 623 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 SHC3Q92529 594 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 BHMTQ93088 406 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 HHIPQ96QV1 700 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 DNAJC17Q9NVM6 304 aaKnown RBP21.87■■□□□ 1.09
VPS28-203ENST00000524521 NCDNQ9UBB6 729 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 RAB23Q9ULC3 237 aa21.87■■□□□ 1.09
VPS28-203ENST00000524521 MYO15AQ9UKN7 3530 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms