RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MIS12Q9H081 205 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 DEF6Q9H4E7 631 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 IL21Q9HBE4 155 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 PARD6AQ9NPB6 346 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CNGB3Q9NQW8 809 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 TRPM5Q9NZQ8 1165 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 GMIPQ9P107 970 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ARHGAP20Q9P2F6 1191 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 SMG5Q9UPR3 1016 aaKnown RBP10.53□□□□□ -0.72
NUP54-203ENST00000504173 SCML2Q9UQR0 700 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 USP3Q9Y6I4 520 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 MYO16Q9Y6X6 1858 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 FAM92AA1XBS5 289 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 DDX3XO00571 662 aaKnown RBP eCLIP10.52□□□□□ -0.733e-11■■□□□ 12
NUP54-203ENST00000504173 LILRB5O75023 590 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 MOSPD3O75425 235 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 GABBR2O75899 941 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 ERBB2P04626 1255 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 UNGP13051 313 aaPredicted RBP10.52□□□□□ -0.73
NUP54-203ENST00000504173 EIF4A3P38919 411 aaKnown RBP10.52□□□□□ -0.73
NUP54-203ENST00000504173 PPP3CCP48454 512 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 DAOAP59103 153 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 CENPCQ03188 943 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 GPR158Q5T848 1215 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 PM20D1Q6GTS8 502 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 OR6B2Q6IFH4 312 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 WDR59Q6PJI9 974 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 CCDC186Q7Z3E2 898 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 TMEM150AQ86TG1 271 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 TMEM110Q86TL2 294 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 MON1AQ86VX9 555 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 ARHGAP18Q8N392 663 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 ZBTB44Q8NCP5 570 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 SLC30A5Q8TAD4 765 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 C18orf8Q96DM3 657 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 PANX2Q96RD6 677 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 SLITRK6Q9H5Y7 841 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 TBC1D17Q9HA65 648 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 TRPC7Q9HCX4 862 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 TLR8Q9NR97 1041 aaKnown RBP10.52□□□□□ -0.73
NUP54-203ENST00000504173 TJP2Q9UDY2 1190 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 CHORDC1Q9UHD1 332 aaPredicted RBP10.52□□□□□ -0.73
NUP54-203ENST00000504173 ADAMTS1Q9UHI8 967 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 NAGPAQ9UK23 515 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 FBXO4Q9UKT5 387 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 NCANO14594 1321 aa10.52□□□□□ -0.73
NUP54-203ENST00000504173 ZNF638Q14966 1978 aaKnown RBP10.52□□□□□ -0.73
NUP54-203ENST00000504173 SMG1Q96Q15 3661 aaKnown RBP10.52□□□□□ -0.73
NUP54-203ENST00000504173 NOTCH4Q99466 2003 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 IGSF10Q6WRI0 2623 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 A0A1W2PQH9 124 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 SSU72P8A0A1W2PR75 194 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 TMEM8BA6NDV4 472 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 ZNF840PA6NDX5 716 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 TMCO5BA8MYB1 307 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 NRG2O14511 850 aaPredicted RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 PAPSS1O43252 624 aaPredicted RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 SART1O43290 800 aaKnown RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 AKR1B10O60218 316 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 LRP3O75074 770 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 DDX6P26196 483 aaKnown RBP eCLIP10.51□□□□□ -0.73
NUP54-203ENST00000504173 GBP2P32456 591 aaPredicted RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 PSEN1P49768 467 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 GSDMDP57764 484 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 YWHAGP61981 247 aaKnown RBP eCLIP10.51□□□□□ -0.73
NUP54-203ENST00000504173 CDK17Q00537 523 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 RING1Q06587 406 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 N4BP2L1Q5TBK1 243 aaPredicted RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 ACAD10Q6JQN1 1059 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 PPP1R2P3Q6NXS1 205 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 UNQ6494/PRO21346Q6UXR6 183 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 MMS22LQ6ZRQ5 1243 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 TOGARAM2Q6ZUX3 1019 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 FAM183BPQ6ZVS7 135 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 OTOP3Q7RTS5 596 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 PHF13Q86YI8 300 aaPredicted RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 SCUBE3Q8IX30 993 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 NPAS3Q8IXF0 933 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 SCML4Q8N228 414 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 OLIG1Q8TAK6 271 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 CLEC4CQ8WTT0 213 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 IRGQQ8WZA9 623 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 NDRG1Q92597 394 aaKnown RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 GOLGA1Q92805 767 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 NELL1Q92832 810 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 FGF13Q92913 245 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 MCRS1Q96EZ8 462 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 MYADMQ96S97 322 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 CHP1Q99653 195 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 C11orf70Q9BRQ4 267 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 NHEJ1Q9H9Q4 299 aaPredicted RBP10.51□□□□□ -0.73
NUP54-203ENST00000504173 NMUR1Q9HB89 426 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 TAS2R14Q9NYV8 317 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.51□□□□□ -0.73
NUP54-203ENST00000504173 ADAM22Q9P0K1 906 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 LHX6Q9UPM6 363 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 DENND4AQ7Z401 1863 aa10.51□□□□□ -0.73
NUP54-203ENST00000504173 TRAV19A0A0A6YYK7 116 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 YJEFN3A6XGL0 299 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 C1QTNF9BB2RNN3 333 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms