RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 MDH1BQ5I0G3 518 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 C1orf220Q5T0J3 134 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 ALS2CLQ60I27 953 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 TTC19Q6DKK2 380 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 ZC3H14Q6PJT7 736 aaKnown RBP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 WDR49Q8IV35 697 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 SFTPA1Q8IWL2 248 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 TMEM86AQ8N2M4 240 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 SPEM1Q8N4L4 309 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 CELF5Q8N6W0 485 aaKnown RBP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 ARL14EPQ8N8R7 260 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 FSIP1Q8NA03 581 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 TTC16Q8NEE8 873 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 ENGASEQ8NFI3 743 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 ATRIPQ8WXE1 791 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 E2F7Q96AV8 911 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 PAGE5Q96GU1 130 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 MYRFLQ96LU7 910 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 NAPGQ99747 312 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 HINFPQ9BQA5 517 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 B3GNT5Q9BYG0 378 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 ZNF518BQ9C0D4 1074 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 LINC00597Q9H2U6 94 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 CUEDC2Q9H467 287 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 SMYD3Q9H7B4 428 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 C8orf33Q9H7E9 229 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 TRPC7Q9HCX4 862 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.62□□□□□ -1.03
HDAC6-234ENST00000493923 WNT6Q9Y6F9 365 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 MYH10P35580 1976 aa8.62□□□□□ -1.03
HDAC6-234ENST00000493923 GOLGA6BA6NDN3 693 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 LRRIQ3A6PVS8 624 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 FGF19O95750 216 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TNNC2P02585 160 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 IMPDH2P12268 514 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 PFKFB1P16118 471 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 MAGEA11P43364 429 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 CXCL12P48061 93 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 LHX1P48742 406 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 MLLT6P55198 1093 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 VSNL1P62760 191 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RPL10AP62906 217 aaKnown RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 SMARCB1Q12824 385 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 USP4Q13107 963 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TBX2Q13207 712 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 ORC1Q13415 861 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RUNX3Q13761 415 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RSPO4Q2I0M5 234 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 ITPRIPL2Q3MIP1 535 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 CFAP221Q4G0U5 840 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TMEM196Q5HYL7 178 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TDRD10Q5VZ19 366 aaKnown RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 CCDC121Q6ZUS5 278 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 PAQR9Q6ZVX9 377 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RALGPS2Q86X27 583 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 SPATA2LQ8IUW3 424 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RBM12BQ8IXT5 1001 aaKnown RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 ARFGAP2Q8N6H7 521 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 XXYLT1Q8NBI6 393 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 C1orf131Q8NDD1 294 aaKnown RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TRIM58Q8NG06 486 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 WBP2Q969T9 261 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TRMT2BQ96GJ1 504 aaKnown RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 PCED1BQ96HM7 432 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 GCNAQ96QF7 691 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 WDR24Q96S15 920 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RUFY1Q96T51 708 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 PNKPQ96T60 521 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 MMS19Q96T76 1030 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 SH3GL2Q99962 352 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 RNF38Q9H0F5 515 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 KCTD10Q9H3F6 313 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 GOLPH3LQ9H4A5 285 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 TDP1Q9NUW8 608 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 DMAC2Q9NW81 257 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 IRAK4Q9NWZ3 460 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 HMGXB4Q9UGU5 601 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 CDH9Q9ULB4 789 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 MAP1BP46821 2468 aaKnown RBP8.61□□□□□ -1.03
HDAC6-234ENST00000493923 CEP295Q9C0D2 2601 aa8.61□□□□□ -1.03
HDAC6-234ENST00000493923 UBE4BO95155 1302 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 F8VP50 259 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 KIAA0391O15091 583 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 C4BPAP04003 597 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 FERP16591 822 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 PTPN1P18031 435 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 TNNI1P19237 187 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 PCSK1P29120 753 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 GJA4P35212 333 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 GNL1P36915 607 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 AVPR1AP37288 418 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 GALK1P51570 392 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CCR3P51677 355 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CCNHP51946 323 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CYP27A1Q02318 531 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 MYO1EQ12965 1108 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 NNTQ13423 1086 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 ZNF268Q14587 947 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 MTF1Q14872 753 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 KNOP1Q1ED39 458 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms