RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 Q6ZNB5 142 aa25.88■■□□□ 1.73
UPF3A-209ENST00000492270 RSRC2Q7L4I2 434 aaKnown RBP25.88■■□□□ 1.73
UPF3A-209ENST00000492270 NAT16Q8N8M0 369 aa25.88■■□□□ 1.73
UPF3A-209ENST00000492270 CDK5RAP1Q96SZ6 601 aaKnown RBP25.88■■□□□ 1.73
UPF3A-209ENST00000492270 NDST4Q9H3R1 872 aa25.88■■□□□ 1.73
UPF3A-209ENST00000492270 SEMA4AQ9H3S1 761 aa25.88■■□□□ 1.73
UPF3A-209ENST00000492270 MYO18AQ92614 2054 aaKnown RBP25.87■■□□□ 1.73
UPF3A-209ENST00000492270 DAOAP59103 153 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 GAD2Q05329 585 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 ANO4Q32M45 955 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 VWA3BQ502W6 1294 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 BTBD8Q5XKL5 378 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 C11orf57Q6ZUT1 292 aaPredicted RBP25.87■■□□□ 1.73
UPF3A-209ENST00000492270 ENOSF1Q7L5Y1 443 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 SUMF1Q8NBK3 374 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 CLEC4CQ8WTT0 213 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 EDEM1Q92611 657 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 MARCH2Q9P0N8 246 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 NFE2L3Q9Y4A8 694 aa25.87■■□□□ 1.73
UPF3A-209ENST00000492270 HOXC11O43248 304 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-209ENST00000492270 LETM1O95202 739 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-209ENST00000492270 KLKB1P03952 638 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 USP8P40818 1118 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 NRLP54845 237 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 CT47A1Q5JQC4 288 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-209ENST00000492270 DENND1BQ6P3S1 775 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 ETFBKMTQ8IXQ9 262 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 PHTF2Q8N3S3 785 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 PNKPQ96T60 521 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 CNGB3Q9NQW8 809 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 CFAP54Q96N23 3096 aa25.86■■□□□ 1.73
UPF3A-209ENST00000492270 OTOGLQ3ZCN5 2332 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 SLC12A8A0AV02 714 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 ATG13O75143 517 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 GNA15P30679 374 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 EIF2DP41214 584 aaKnown RBP25.85■■□□□ 1.73
UPF3A-209ENST00000492270 PXNP49023 591 aaPredicted RBP25.85■■□□□ 1.73
UPF3A-209ENST00000492270 BSPRYQ5W0U4 402 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 DPY19L2P1Q6NXN4 242 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 TPGS1Q6ZTW0 290 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 SCML4Q8N228 414 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 SHC3Q92529 594 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 ARHGEF4Q9NR80 690 aa25.85■■□□□ 1.73
UPF3A-209ENST00000492270 NEDD8-MDP1E9PL57 170 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 TRIM24O15164 1050 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 THAP12O43422 761 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 TULP3O75386 442 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 KAT7O95251 611 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 MBD3O95983 291 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 PNMA6AP0CW24 399 aaPredicted RBP25.84■■□□□ 1.73
UPF3A-209ENST00000492270 GPD2P43304 727 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 COG7P83436 770 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 SRSF5Q13243 272 aaKnown RBP25.84■■□□□ 1.73
UPF3A-209ENST00000492270 C2orf27AQ580R0 203 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 TCP11X2Q5H9J9 407 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 ENOX1Q8TC92 643 aaKnown RBP25.84■■□□□ 1.73
UPF3A-209ENST00000492270 USP33Q8TEY7 942 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 ZNF606Q8WXB4 792 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 P2RY11Q96G91 374 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 FAM81BQ96LP2 452 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 EPC1Q9H2F5 836 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 TAB2Q9NYJ8 693 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 SFMBT1Q9UHJ3 866 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 CYTH4Q9UIA0 394 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 DNAJC12Q9UKB3 198 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 STRIP2Q9ULQ0 834 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 ZNF292O60281 2723 aa25.84■■□□□ 1.73
UPF3A-209ENST00000492270 PES1O00541 588 aaKnown RBP25.83■■□□□ 1.73
UPF3A-209ENST00000492270 APODP05090 189 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 CORO1AP31146 461 aaKnown RBP25.83■■□□□ 1.73
UPF3A-209ENST00000492270 KCNMA1Q12791 1236 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 HSFY1Q96LI6 401 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 HHIPQ96QV1 700 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 BBS2Q9BXC9 721 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 MIS12Q9H081 205 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 SLC8A2Q9UPR5 921 aa25.83■■□□□ 1.73
UPF3A-209ENST00000492270 SPAG17Q6Q759 2223 aa25.83■■□□□ 1.72
UPF3A-209ENST00000492270 CHRM1P11229 460 aaPredicted RBP25.82■■□□□ 1.72
UPF3A-209ENST00000492270 TYRP14679 529 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 EEF1GP26641 437 aaKnown RBP25.82■■□□□ 1.72
UPF3A-209ENST00000492270 CCDC183Q5T5S1 534 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 CDKAL1Q5VV42 579 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 SASS6Q6UVJ0 657 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 LONP2Q86WA8 852 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 FMNL3Q8IVF7 1028 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 RNF139Q8WU17 664 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 BHMTQ93088 406 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 ZDHHC4Q9NPG8 344 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 ST7Q9NRC1 585 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 ABCC13Q9NSE7 274 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 OLA1Q9NTK5 396 aaKnown RBP25.82■■□□□ 1.72
UPF3A-209ENST00000492270 MARK1Q9P0L2 795 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 AGO1Q9UL18 857 aaKnown RBP25.82■■□□□ 1.72
UPF3A-209ENST00000492270 SMG5Q9UPR3 1016 aaKnown RBP25.82■■□□□ 1.72
UPF3A-209ENST00000492270 GPR179Q6PRD1 2367 aa25.82■■□□□ 1.72
UPF3A-209ENST00000492270 EP300Q09472 2414 aaPredicted RBP25.82■■□□□ 1.72
UPF3A-209ENST00000492270 GVINP1Q7Z2Y8 2422 aa25.81■■□□□ 1.72
UPF3A-209ENST00000492270 PALM2-AKAP2B1ALY0 433 aaPredicted RBP25.81■■□□□ 1.72
UPF3A-209ENST00000492270 MSI1O43347 362 aaKnown RBP25.81■■□□□ 1.72
UPF3A-209ENST00000492270 MED7O43513 233 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms