RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 FAM135BQ49AJ0 1406 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 EVC2Q86UK5 1308 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 A0A1B0GTW7 788 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 CAPN14A8MX76 684 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 C1QTNF3-AMACRE9PGA6 284 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 F5H697 171 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 J3KTA2 159 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ZNF185O15231 689 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ZSCAN9O15535 394 aaPredicted RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 SOAT2O75908 522 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 RAD17O75943 681 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 SUN1O94901 812 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 MBD4O95243 580 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 GPANK1O95872 356 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ARP10275 920 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 HGFP14210 728 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 KCNA2P16389 499 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 XBP1P17861 261 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 FGFR4P22455 802 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 NTSR1P30989 418 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 MAN1A1P33908 653 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 AARSP49588 968 aaKnown RBP eCLIP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 HMGA2P52926 109 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 HHEXQ03014 270 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ATP1A4Q13733 1029 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 BTBD16Q32M84 506 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 PREPLQ4J6C6 727 aaPredicted RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 C1QL3Q5VWW1 255 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 RGS7BPQ6MZT1 257 aaPredicted RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 RINT1Q6NUQ1 792 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 GLB1LQ6UWU2 654 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 CPOQ8IVL8 374 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 HERC6Q8IVU3 1022 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 SLC15A3Q8IY34 581 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 COLGALT2Q8IYK4 626 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 NRSN1Q8IZ57 195 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ANKRD35Q8N283 1001 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ZBTB45Q96K62 511 aaPredicted RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 MED15Q96RN5 788 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 DDX23Q9BUQ8 820 aaKnown RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 C1QTNF3Q9BXJ4 246 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 DNAJB11Q9UBS4 358 aa4.58□□□□□ -1.68
PTCD3-216ENST00000487043 NDRG4Q9ULP0 352 aaKnown RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ZFR2Q9UPR6 939 aaKnown RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 ARHGEF28Q8N1W1 1705 aaKnown RBP4.58□□□□□ -1.68
PTCD3-216ENST00000487043 DIP2AQ14689 1571 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 NPHP4O75161 1426 aaPredicted RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 PNMA6EA0A0J9YXQ4 647 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 NPEPPSL1A6NEC2 478 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 H0Y3Z8 333 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 CD3EAPO15446 510 aaKnown RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 ANP32CO43423 234 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 KRT38O76015 456 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 FAM163BP0C2L3 166 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 C6P13671 934 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 PRKAR1BP31321 381 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 SLC5A2P31639 672 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 CASP2P42575 452 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 GDF5P43026 501 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 NDUFV1P49821 464 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 TUBP50607 506 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 ANXA11P50995 505 aaKnown RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 PGDP52209 483 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 OCA2Q04671 838 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 SLC12A1Q13621 1099 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 E2F2Q14209 437 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 GRM4Q14833 912 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 CD300EQ496F6 205 aaPredicted RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 ABLIM2Q6H8Q1 611 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 TCTN3Q6NUS6 607 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 CLNKQ7Z7G1 428 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 NME8Q8N427 588 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 OR6Y1Q8NGX8 325 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 SH3RF3Q8TEJ3 882 aaPredicted RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 ABHD5Q8WTS1 349 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 THAP4Q8WY91 577 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 GOLGA1Q92805 767 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 DVL3Q92997 716 aaPredicted RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 C3orf49Q96BT1 292 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 SORCS2Q96PQ0 1159 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 HIST1H2AAQ96QV6 131 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 MNTQ99583 582 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 KRTAP3-1Q9BYR8 98 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 TRIM5Q9C035 493 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 ELAC1Q9H777 363 aaKnown RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 UBN1Q9NPG3 1134 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 WASH6PQ9NQA3 447 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 RNF181Q9P0P0 153 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 EIF2B4Q9UI10 523 aaKnown RBP4.57□□□□□ -1.68
PTCD3-216ENST00000487043 ST6GALNAC2Q9UJ37 374 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 DAPP1Q9UN19 280 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 SLC30A1Q9Y6M5 507 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 QRICH2Q9H0J4 1663 aa4.57□□□□□ -1.68
PTCD3-216ENST00000487043 PTPRUQ92729 1446 aa4.56□□□□□ -1.68
PTCD3-216ENST00000487043 PLEKHH1Q9ULM0 1364 aa4.56□□□□□ -1.68
PTCD3-216ENST00000487043 KNDC1Q76NI1 1749 aa4.56□□□□□ -1.68
PTCD3-216ENST00000487043 OR2W5A6NFC9 320 aa4.56□□□□□ -1.68
PTCD3-216ENST00000487043 A6NLC8 198 aa4.56□□□□□ -1.68
PTCD3-216ENST00000487043 FOXS1O43638 330 aa4.56□□□□□ -1.68
PTCD3-216ENST00000487043 SNX2O60749 519 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms