RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 GRIK3Q13003 919 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 LPIN1Q14693 890 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 ZNF638Q14966 1978 aaKnown RBP10.2□□□□□ -0.78
USP39-214ENST00000474572 KCNA10Q16322 511 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 QPCTQ16769 361 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 UPP1Q16831 310 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 SKIDA1Q1XH10 827 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 MSS51Q4VC12 460 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 MDH1BQ5I0G3 518 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 FNBP1LQ5T0N5 605 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 NCBP2-AS2Q69YL0 99 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 DARS2Q6PI48 645 aaKnown RBP10.2□□□□□ -0.78
USP39-214ENST00000474572 C1orf228Q6PIY5 440 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 CD300LGQ6UXG3 332 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 BHLHA9Q7RTU4 235 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 ZNF598Q86UK7 904 aaKnown RBP10.2□□□□□ -0.78
USP39-214ENST00000474572 TRABD2AQ86V40 505 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 ZBED8Q8IZ13 594 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 CCDC185Q8N715 623 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 PCSK9Q8NBP7 692 aaKnown RBP10.2□□□□□ -0.78
USP39-214ENST00000474572 LPPQ93052 612 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 NTAN1Q96AB6 310 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 PGAP3Q96FM1 320 aaPredicted RBP10.2□□□□□ -0.78
USP39-214ENST00000474572 CHMP6Q96FZ7 201 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 OLFM3Q96PB7 478 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 QKIQ96PU8 341 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP39-214ENST00000474572 CSPG4P5Q96PW8 444 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 SLC9A7Q96T83 725 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 PKMYT1Q99640 499 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 SMOQ99835 787 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 RTP3Q9BQQ7 232 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 PNPLA8Q9NP80 782 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 CNGB3Q9NQW8 809 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 SENP1Q9P0U3 644 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 RABGEF1Q9UJ41 708 aa10.2□□□□□ -0.78
USP39-214ENST00000474572 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.2□□□□□ -0.78
USP39-214ENST00000474572 EXOC1LA0A1B0GW35 172 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 TMEM120BA0PK00 339 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 HACD1B0YJ81 288 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 H7C0C1 242 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 M0QZQ0 153 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 CLDN5O00501 218 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 PRPF4O43172 522 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP39-214ENST00000474572 GCATO75600 419 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 SPAG6O75602 509 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 DGKIO75912 1065 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 ZBED1O96006 694 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 C1QAP02745 245 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 FYNP06241 537 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 SKIP12755 728 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 CREB1P16220 341 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 ACAT1P24752 427 aaKnown RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 RBL1P28749 1068 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 CD52P31358 61 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 PHBP35232 272 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 ATP5OP48047 213 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 YWHAZP63104 245 aaKnown RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 SCAPQ12770 1279 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 SLC10A2Q12908 348 aaPredicted RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 KLHL38Q2WGJ6 581 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 CCDC38Q502W7 563 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 SLC45A4Q5BKX6 768 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 FAM171BQ6P995 826 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 MICALCLQ6ZW33 695 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 ZC3H18Q86VM9 953 aaKnown RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 REM2Q8IYK8 340 aaPredicted RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 PDIK1LQ8N165 341 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 MCUQ8NE86 351 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 CKAP2Q8WWK9 683 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 PGBD4Q96DM1 585 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 PCED1BQ96HM7 432 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 UROC1Q96N76 676 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 RABEP2Q9H5N1 569 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 DHX35Q9H5Z1 703 aaKnown RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 ACSS3Q9H6R3 686 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 POPDC2Q9HBU9 364 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 LRRC4Q9HBW1 653 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 SSU72Q9NP77 194 aaKnown RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 KRT82Q9NSB4 513 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 RRN3Q9NYV6 651 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 CACNG4Q9UBN1 327 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 XPO7Q9UIA9 1087 aaKnown RBP10.19□□□□□ -0.78
USP39-214ENST00000474572 STAP1Q9ULZ2 295 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 TEX264Q9Y6I9 313 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 FAM169AQ9Y6X4 670 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 PLXNA3P51805 1871 aa10.19□□□□□ -0.78
USP39-214ENST00000474572 MYBPHLA2RUH7 354 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 MYO1CO00159 1063 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 NRP1O14786 923 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 KCNN4O15554 427 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 ZNF189O75820 626 aaPredicted RBP10.18□□□□□ -0.78
USP39-214ENST00000474572 FAM155BO75949 473 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 GHRP10912 638 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 ODC1P11926 461 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 PRKAR2AP13861 404 aaKnown RBP10.18□□□□□ -0.78
USP39-214ENST00000474572 BRAFP15056 766 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 TPSB2P20231 275 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 PCSK1P29120 753 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 THPOP40225 353 aa10.18□□□□□ -0.78
USP39-214ENST00000474572 MAGEA3P43357 314 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms