RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RPL22P35268 128 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 IFNAR2P48551 515 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MFAP3P55082 362 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 INCA1Q0VD86 236 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PKDCCQ504Y2 493 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MFSD7Q6UXD7 560 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 RNF165Q6ZSG1 346 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TFAP2DQ7Z6R9 452 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PHLDB2Q86SQ0 1253 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 USP37Q86T82 979 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SEPT12Q8IYM1 358 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 FBXO36Q8NEA4 188 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 HMGCLL1Q8TB92 370 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PNPT1Q8TCS8 783 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MIPOL1Q8TD10 442 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TCP10LQ8TDR4 215 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TFB1MQ8WVM0 346 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SERAC1Q96JX3 654 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 OXCT2Q9BYC2 517 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ABCD2Q9UBJ2 740 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MAGED2Q9UNF1 606 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SIP14410 1827 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ATMINO43313 823 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 IGFBP4P22692 258 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CA4P22748 312 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TRPC3Q13507 836 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PTK2BQ14289 1009 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SLFN13Q68D06 897 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CASC4Q6P4E1 433 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RIPOR1Q6ZS17 1223 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MAPKAPK5Q8IW41 473 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TAS1R2Q8TE23 839 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TUBA1CQ9BQE3 449 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 COA1Q9GZY4 146 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 XYLT2Q9H1B5 865 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MRPL47Q9HD33 250 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ADAMTS6Q9UKP5 1117 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PTPN22Q9Y2R2 807 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SCN4AP35499 1836 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SEC14L5O43304 696 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 LRCH4O75427 683 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RPA3P35244 121 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CYP24A1Q07973 514 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CEACAM7Q14002 265 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 EFHC1Q5JVL4 640 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 FYB2Q5VWT5 728 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ZPBP2Q6X784 338 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TMEM179Q6ZVK1 233 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 DPP9Q86TI2 863 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TAB3Q8N5C8 712 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 WDTC1Q8N5D0 677 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 STMN2Q93045 179 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MROQ9BYG7 248 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SMYD2Q9NRG4 433 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ZFP69BQ9UJL9 534 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PCDHA1Q9Y5I3 950 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 EMSYQ7Z589 1322 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 LOC285556D6RIA3 1793 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TCAF2A6NFQ2 919 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 P4HBP07237 508 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM49P0CI25 452 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM49CP0CI26 452 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 DNAJB2P25686 324 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 IREB2P48200 963 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PRELPP51888 382 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CHN2P52757 468 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 OXCT1P55809 520 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 IFRD2Q12894 506 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ILF2Q12905 390 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RCN2Q14257 317 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RCN1Q15293 331 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TLR1Q15399 786 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CCDC14Q49A88 953 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 HHATQ5VTY9 493 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 AADACL2Q6P093 401 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 FAM117BQ6P1L5 589 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CAPN12Q6ZSI9 719 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SPRED1Q7Z699 444 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PQLC1Q8N2U9 271 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PJA1Q8NG27 643 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MARVELD3Q96A59 401 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 LENG1Q96BZ8 264 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TBC1D20Q96BZ9 403 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 POP1Q99575 1024 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MANSC1Q9H8J5 431 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PTPRHQ9HD43 1115 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 DDX56Q9NY93 547 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PCDHB12Q9Y5F1 795 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SBK3P0C264 359 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 NMT1P30419 496 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SERPINB5P36952 375 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ARL4CP56559 192 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SLC10A2Q12908 348 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 DLG1Q12959 904 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TUBA3CQ13748 450 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF829Q3KNS6 432 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SGO2Q562F6 1265 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RNF207Q6ZRF8 634 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 THNSL1Q8IYQ7 743 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 UNC5BQ8IZJ1 945 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms