RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 EGFLAMQ63HQ2 1017 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 RINT1Q6NUQ1 792 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 DHRS13Q6UX07 377 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 C1orf186Q6ZWK4 172 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 RUFY3Q7L099 469 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ZCCHC9Q8N567 271 aaKnown RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 TMEM161BQ8NDZ6 487 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CEP76Q8TAP6 659 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SPPL2BQ8TCT7 592 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 NANOS1Q8WY41 292 aaKnown RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 KIFAP3Q92845 792 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 P2RY11Q96G91 374 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF274Q96GC6 653 aaPredicted RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF419Q96HQ0 510 aaPredicted RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SPACA7Q96KW9 195 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 FCRL3Q96P31 734 aaPredicted RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 PNKPQ96T60 521 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 PKMYT1Q99640 499 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 GAREM1Q9H706 876 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 DDX19AQ9NUU7 478 aaKnown RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SMPD4Q9NXE4 827 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 GMIPQ9P107 970 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 KIAA1522Q9P206 1035 aaPredicted RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 HSFX1Q9UBD0 423 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 GTF3C4Q9UKN8 822 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 STK36Q9NRP7 1315 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 TRAV19A0A0A6YYK7 116 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 A6NHS1 94 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 KCNJ18B7U540 433 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ANKRD63C9JTQ0 380 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 CLDN3O15551 220 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 TNFRSF21O75509 655 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 NFATC1O95644 943 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 APODP05090 189 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ADRB2P07550 413 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 CLTAP09496 248 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 CSH1P0DML2 217 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 CSH2P0DML3 217 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 HOXD12P35452 270 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 GUCY1B3Q02153 619 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 SEMG2Q02383 582 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 SFSWAPQ12872 951 aaKnown RBP5.66□□□□□ -1.5
PTPN4-209ENST00000469511 LY6DQ14210 128 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 IL17AQ16552 155 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 HLA-BQ31612 363 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 BMP2KLQ5H9B9 411 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 KCNT1Q5JUK3 1230 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 SPDYCQ5MJ68 293 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 EOGTQ5NDL2 527 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 LY6G5CQ5SRR4 150 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 SLC39A4Q6P5W5 647 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 LAYNQ6UX15 382 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 DBX2Q6ZNG2 339 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF438Q7Z4V0 828 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 APBB1IPQ7Z5R6 666 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-209ENST00000469511 FMNL3Q8IVF7 1028 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 SCN4BQ8IWT1 228 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 DIS3L2Q8IYB7 885 aaKnown RBP5.66□□□□□ -1.5
PTPN4-209ENST00000469511 C4orf32Q8N8J7 132 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 NECAB1Q8N987 351 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ZSWIM2Q8NEG5 633 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 SNX29Q8TEQ0 813 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 MYRFLQ96LU7 910 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 NAP1L4Q99733 375 aaKnown RBP5.66□□□□□ -1.5
PTPN4-209ENST00000469511 OXCT2Q9BYC2 517 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-209ENST00000469511 GSX2Q9BZM3 304 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 TMEM206Q9H813 350 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 PLEKHA5Q9HAU0 1116 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ARHGEF4Q9NR80 690 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 TM7SF3Q9NS93 570 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 MARK1Q9P0L2 795 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ORC3Q9UBD5 711 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ARHGAP26Q9UNA1 814 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 PCDHB5Q9Y5E4 795 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 ATMQ13315 3056 aa5.66□□□□□ -1.5
PTPN4-209ENST00000469511 AHCTF1Q8WYP5 2266 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 A0A1B0GVT2 93 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 MYMKA6NI61 221 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 PRRT4C9JH25 899 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 JAK2O60674 1132 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 TULP3O75386 442 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 HOXB2P14652 356 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 TCF3P15923 654 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 MATR3P43243 847 aaKnown RBP eCLIP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 CSNK1EP49674 416 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 ACOT2P49753 483 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 PPP2R3AQ06190 1150 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 RESTQ13127 1097 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 PDIA5Q14554 519 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 SMAD1Q15797 465 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 PRAMEF14Q5SWL7 426 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 ALG1LQ6GMV1 187 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 FOXR1Q6PIV2 292 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 SLC36A4Q6YBV0 504 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 FAM177A1Q8N128 213 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF513Q8N8E2 541 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 FAM181AQ8N9Y4 354 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 SPATA18Q8TC71 538 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 FBF1Q8TES7 1133 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 IPO4Q8TEX9 1081 aaKnown RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms