RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TNFRSF4P43489 277 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 MESP2Q0VG99 397 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 TPD52L1Q16890 204 aaPredicted RBP22.26■■□□□ 1.15
HMGB3-205ENST00000455596 Q6ZNB5 142 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 CLEC17AQ6ZS10 378 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 TPGS1Q6ZTW0 290 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 NUDT18Q6ZVK8 323 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.26■■□□□ 1.15
HMGB3-205ENST00000455596 PHTF2Q8N3S3 785 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 GAB3Q8WWW8 586 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 MED15Q96RN5 788 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 BBS2Q9BXC9 721 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 DEC1Q9P2X7 70 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 MMP17Q9ULZ9 603 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 NEDD8-MDP1E9PL57 170 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 M0QYV0 167 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 AXIN1O15169 862 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 RPP40O75818 363 aaKnown RBP22.25■■□□□ 1.15
HMGB3-205ENST00000455596 TIE1P35590 1138 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 HSF5Q4G112 596 aaPredicted RBP22.25■■□□□ 1.15
HMGB3-205ENST00000455596 BHLHA9Q7RTU4 235 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 SFTPA1Q8IWL2 248 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 SCML4Q8N228 414 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 CCDC33Q8N5R6 958 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 NDRG1Q92597 394 aaKnown RBP22.25■■□□□ 1.15
HMGB3-205ENST00000455596 KREMEN1Q96MU8 473 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 XPO6Q96QU8 1125 aaKnown RBP22.25■■□□□ 1.15
HMGB3-205ENST00000455596 DCLK3Q9C098 648 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 NUP62CLQ9H1M0 184 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 UBE2TQ9NPD8 197 aaPredicted RBP22.25■■□□□ 1.15
HMGB3-205ENST00000455596 CNGB3Q9NQW8 809 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 OLA1Q9NTK5 396 aaKnown RBP22.25■■□□□ 1.15
HMGB3-205ENST00000455596 MARK1Q9P0L2 795 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 MARCH2Q9P0N8 246 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 WDR35Q9P2L0 1181 aa22.25■■□□□ 1.15
HMGB3-205ENST00000455596 TBC1D3BA6NDS4 549 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 ANTXRLA6NF34 631 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 RETP07949 1114 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 HMBSP08397 361 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 LCP1P13796 627 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 TYRP14679 529 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 ZNF132P52740 706 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 TSTD1Q8NFU3 115 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 SLC35F5Q8WV83 523 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 FAM81BQ96LP2 452 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 ZSWIM1Q9BR11 485 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 DNAJC17Q9NVM6 304 aaKnown RBP22.24■■□□□ 1.15
HMGB3-205ENST00000455596 EBF1Q9UH73 591 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 DACH1Q9UI36 760 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 CNTN6Q9UQ52 1028 aa22.24■■□□□ 1.15
HMGB3-205ENST00000455596 SLC12A8A0AV02 714 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 CACNG3O60359 315 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 KLF8O95600 359 aaPredicted RBP22.23■■□□□ 1.15
HMGB3-205ENST00000455596 KRT5P13647 590 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 CORO1AP31146 461 aaKnown RBP22.23■■□□□ 1.15
HMGB3-205ENST00000455596 CHKAP35790 457 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 KIR2DL1P43626 348 aaPredicted RBP22.23■■□□□ 1.15
HMGB3-205ENST00000455596 MTIF2P46199 727 aaKnown RBP22.23■■□□□ 1.15
HMGB3-205ENST00000455596 ID4P47928 161 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 RGS7P49802 495 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 CRY1Q16526 586 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 GRAMD4Q6IC98 578 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 TRIM65Q6PJ69 517 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 ENOSF1Q7L5Y1 443 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 FAM160A2Q8N612 972 aaPredicted RBP22.23■■□□□ 1.15
HMGB3-205ENST00000455596 ALLCQ8N6M5 410 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 TERB1Q8NA31 727 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 IL17RCQ8NAC3 791 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 RNF139Q8WU17 664 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 CRACR2AQ9BSW2 395 aa22.23■■□□□ 1.15
HMGB3-205ENST00000455596 EP300Q09472 2414 aaPredicted RBP22.22■■□□□ 1.15
HMGB3-205ENST00000455596 YJEFN3A6XGL0 299 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 E7ENQ6 273 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 CALCAP01258 141 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 KLKB1P03952 638 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 DGKEP52429 567 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 MFAP3P55082 362 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 DAOAP59103 153 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 DPCR1Q3MIW9 517 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 EOGTQ5NDL2 527 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 C10orf76Q5T2E6 689 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 EMC10Q5UCC4 262 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 BSPRYQ5W0U4 402 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 PMF1Q6P1K2 205 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 GBP6Q6ZN66 633 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 CACNA2D4Q7Z3S7 1137 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 IRF2BP1Q8IU81 584 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 FAM114A1Q8IWE2 563 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 TXNDC5Q8NBS9 432 aaKnown RBP22.22■■□□□ 1.15
HMGB3-205ENST00000455596 KCNV2Q8TDN2 545 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 PLD4Q96BZ4 506 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 THAP9Q9H5L6 903 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 ABCC13Q9NSE7 274 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 LMBRD1Q9NUN5 540 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 USP18Q9UMW8 372 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 GVINP1Q7Z2Y8 2422 aa22.22■■□□□ 1.15
HMGB3-205ENST00000455596 THADAQ6YHU6 1953 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 LRP3O75074 770 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 CHRM1P11229 460 aaPredicted RBP22.21■■□□□ 1.15
HMGB3-205ENST00000455596 SPEM2Q0P670 501 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms