RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 FAM126AQ9BYI3 521 aaPredicted RBP13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 CNGB3Q9NQW8 809 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 MARCH2Q9P0N8 246 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 RASAL2Q9UJF2 1139 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 LSM7Q9UK45 103 aaKnown RBP13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 DNAJC12Q9UKB3 198 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 AJAP1Q9UKB5 411 aaPredicted RBP13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 PCDHGA2Q9Y5H1 932 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 A0A0A0MRY4 1105 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 ANTXRLA6NF34 631 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 CHURC1-FNTBB4DL54 471 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 FOXN3O00409 490 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 THAP12O43422 761 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 LILRB5O75023 590 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 ATG13O75143 517 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 HMBSP08397 361 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 EEF1GP26641 437 aaKnown RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 EIF2DP41214 584 aaKnown RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 RPL34P49207 117 aaKnown RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 NRLP54845 237 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 DAOAP59103 153 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 DMWDQ09019 674 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 ANO4Q32M45 955 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 CCDC183Q5T5S1 534 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 C11orf57Q6ZUT1 292 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 RSRC2Q7L4I2 434 aaKnown RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 SFTPA1Q8IWL2 248 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 SCUBE3Q8IX30 993 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 EDEM1Q92611 657 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 HSFY1Q96LI6 401 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 POLR3BQ9NW08 1133 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 ANO10Q9NW15 660 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 FANCLQ9NW38 375 aa13.35□□□□□ -0.27
PRPF40A-203ENST00000448428 SLC12A8A0AV02 714 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 PES1O00541 588 aaKnown RBP13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 HOXC11O43248 304 aaPredicted RBP13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 MED7O43513 233 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 LMNAP02545 664 aaKnown RBP13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 GNA15P30679 374 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 FNTBP49356 437 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 CDKAL1Q5VV42 579 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 HEATR6Q6AI08 1181 aaKnown RBP13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 TPGS1Q6ZTW0 290 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 ETFBKMTQ8IXQ9 262 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 PHTF2Q8N3S3 785 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 SUMF1Q8NBK3 374 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 RPLP0P6Q8NHW5 317 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 USP33Q8TEY7 942 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 CLEC4CQ8WTT0 213 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 RNF139Q8WU17 664 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 IRGQQ8WZA9 623 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 MIS12Q9H081 205 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 VPS16Q9H269 839 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 ABCC13Q9NSE7 274 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 OLA1Q9NTK5 396 aaKnown RBP13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 TAB2Q9NYJ8 693 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 TMEM63CQ9P1W3 806 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 STRIP2Q9ULQ0 834 aa13.34□□□□□ -0.27
PRPF40A-203ENST00000448428 MYO18AQ92614 2054 aaKnown RBP13.33□□□□□ -0.27
PRPF40A-203ENST00000448428 TULP3O75386 442 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 KAT7O95251 611 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 APODP05090 189 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 CORO1AP31146 461 aaKnown RBP13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 HOXA6P31267 233 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 CLCN1P35523 988 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 GRIA2P42262 883 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 SEC13P55735 322 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 KDSRQ06136 332 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 KRT31Q15323 416 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 STX1AQ16623 288 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 MEA1Q16626 185 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 C2orf27AQ580R0 203 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 EMC10Q5UCC4 262 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 KLHDC7AQ5VTJ3 777 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 SMYD5Q6GMV2 418 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 DENND1CQ8IV53 801 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 FMNL3Q8IVF7 1028 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 WDTC1Q8N5D0 677 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 STK32AQ8WU08 396 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 BBS2Q9BXC9 721 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 SLC4A5Q9BY07 1137 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 DCLK3Q9C098 648 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 ARHGEF4Q9NR80 690 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 ST7Q9NRC1 585 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 WDR35Q9P2L0 1181 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 DEC1Q9P2X7 70 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 SFMBT1Q9UHJ3 866 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 CYTH4Q9UIA0 394 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 AGO1Q9UL18 857 aaKnown RBP13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 SLC8A2Q9UPR5 921 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 ZNF510Q9Y2H8 683 aa13.33□□□□□ -0.28
PRPF40A-203ENST00000448428 EML5Q05BV3 1969 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 NEDD8-MDP1E9PL57 170 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 TRIM24O15164 1050 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 HRO43593 1189 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 FBXO21O94952 628 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 LTFP02788 710 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 FYNP06241 537 aa13.32□□□□□ -0.28
PRPF40A-203ENST00000448428 PNMA6AP0CW24 399 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms