RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 COL4A3Q01955 1670 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 CHURC1-FNTBB4DL54 471 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 CAPN9O14815 690 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 SCAMP3O14828 347 aaKnown RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 MDM4O15151 490 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 RNF40O75150 1001 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 PAPSS2O95340 614 aaPredicted RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 CYBBP04839 570 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 CNR2P34972 360 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 KRT9P35527 623 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 GPD2P43304 727 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 HARS2P49590 506 aaKnown RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 MRPS21P82921 87 aaKnown RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 GAS6Q14393 721 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 MIIPQ5JXC2 388 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 MAML2Q8IZL2 1156 aaPredicted RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 SHC3Q92529 594 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 PLD4Q96BZ4 506 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 PCMTD1Q96MG8 357 aaPredicted RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 MIS12Q9H081 205 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 ARHGEF4Q9NR80 690 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 FANCLQ9NW38 375 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 TAB2Q9NYJ8 693 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 DEC1Q9P2X7 70 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 HBS1LQ9Y450 684 aaKnown RBP10.96□□□□□ -0.65
MCF2L-216ENST00000439475 DAAM1Q9Y4D1 1078 aa10.96□□□□□ -0.65
MCF2L-216ENST00000439475 ATG2BQ96BY7 2078 aa10.96□□□□□ -0.66
MCF2L-216ENST00000439475 MYOFQ9NZM1 2061 aa10.96□□□□□ -0.66
MCF2L-216ENST00000439475 MUC6Q6W4X9 2439 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TBC1D3BA6NDS4 549 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 YJEFN3A6XGL0 299 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 E7ENQ6 273 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 HOXC11O43248 304 aaPredicted RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 GFRA3O60609 400 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 STC2O76061 302 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 LMNAP02545 664 aaKnown RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 LTFP02788 710 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 HMBSP08397 361 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 OPRD1P41143 372 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 GRIA2P42262 883 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TNFRSF4P43489 277 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 SATB1Q01826 763 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TYRO3Q06418 890 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 KCNMA1Q12791 1236 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 RAPGEF1Q13905 1077 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 DRAP1Q14919 205 aaPredicted RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 E2F5Q15329 346 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 HSF5Q4G112 596 aaPredicted RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 KLHDC7AQ5VTJ3 777 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TSSK4Q6SA08 328 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 Q6ZS52 159 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TPGS1Q6ZTW0 290 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TMEM25Q86YD3 366 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 UNC45BQ8IWX7 931 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 CAMKK1Q8N5S9 505 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 NAT16Q8N8M0 369 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 ZBTB44Q8NCP5 570 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 NDRG1Q92597 394 aaKnown RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 FAM149B1Q96BN6 582 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 PHOX2BQ99453 314 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 ZSWIM1Q9BR11 485 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 LSM14BQ9BX40 385 aaKnown RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 BBS2Q9BXC9 721 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 LHX5Q9H2C1 402 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 FBRSL1Q9HCM7 1045 aaKnown RBP10.95□□□□□ -0.66
MCF2L-216ENST00000439475 SIX2Q9NPC8 291 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 TMEM63CQ9P1W3 806 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 RAB23Q9ULC3 237 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 PCDHGC3Q9UN70 934 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 R4GN57 208 aa10.95□□□□□ -0.66
MCF2L-216ENST00000439475 A0A0A0MRY4 1105 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 CCDC163A0A0D9SF12 145 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 BECN2A8MW95 431 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 FOXN3O00409 490 aaPredicted RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 PIK3R2O00459 728 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 KAT7O95251 611 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 CALCAP01258 141 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 NCAM1P13591 858 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 CORO1AP31146 461 aaKnown RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 HOXA6P31267 233 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 SLC6A11P48066 632 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 RPL34P49207 117 aaKnown RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 COPB1P53618 953 aaKnown RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 ZNF445P59923 1031 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 KRT31Q15323 416 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 FILIP1LQ4L180 1135 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 CDKAL1Q5VV42 579 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 CAVIN1Q6NZI2 390 aaKnown RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 DENND1BQ6P3S1 775 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 C11orf57Q6ZUT1 292 aaPredicted RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 SYT13Q7L8C5 426 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 TRMT11Q7Z4G4 463 aaKnown RBP10.94□□□□□ -0.66
MCF2L-216ENST00000439475 TMEM110Q86TL2 294 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 LONP2Q86WA8 852 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 DENND1CQ8IV53 801 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 FMNL3Q8IVF7 1028 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 SCUBE3Q8IX30 993 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 CPXM2Q8N436 756 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 RPLP0P6Q8NHW5 317 aa10.94□□□□□ -0.66
MCF2L-216ENST00000439475 KCNV2Q8TDN2 545 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms