RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CDR2LQ86X02 465 aaPredicted RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 TMPRSS6Q8IU80 811 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 PQLC3Q8N755 202 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SMC1BQ8NDV3 1235 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 CCDC110Q8TBZ0 833 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SPDL1Q96EA4 605 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SPATA33Q96N06 139 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SLC24A3Q9HC58 644 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TAS2R1Q9NYW7 299 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SIRPGQ9P1W8 387 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TSPAN16Q9UKR8 245 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 C2CD2Q9Y426 696 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 WDR90Q96KV7 1748 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 NVLO15381 856 aaKnown RBP11.71□□□□□ -0.53
USP4-205ENST00000431357 AVILO75366 819 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 GCATO75600 419 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 RFPL1O75677 317 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 SDC4P31431 198 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 CRHR1P34998 444 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 RAP1GDS1P52306 607 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 TMPRSS15P98073 1019 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 SLC34A1Q06495 639 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 TRNP1Q6NT89 227 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 SCYL2Q6P3W7 929 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 DSTYKQ6XUX3 929 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 TIFABQ6ZNK6 161 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 RINLQ6ZS11 566 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 APBB1IPQ7Z5R6 666 aaPredicted RBP11.71□□□□□ -0.53
USP4-205ENST00000431357 ZDHHC17Q8IUH5 632 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 CRLF3Q8IUI8 442 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 NUDCD3Q8IVD9 361 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 GSDMBQ8TAX9 411 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 STMN2Q93045 179 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 SIKE1Q9BRV8 207 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 OSBPL1AQ9BXW6 950 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 MINDY3Q9H8M7 445 aa11.71□□□□□ -0.53
USP4-205ENST00000431357 XAB2Q9HCS7 855 aaKnown RBP11.71□□□□□ -0.53
USP4-205ENST00000431357 FBXO6Q9NRD1 293 aaPredicted RBP11.71□□□□□ -0.53
USP4-205ENST00000431357 LRRC37A2A6NM11 1700 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 FAM237BA0A1B0GVD1 139 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 SLC15A5A6NIM6 579 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 FAM159BA6NKW6 160 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 F8W8V4 182 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 SOCS7O14512 581 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 USP2O75604 605 aaPredicted RBP11.71□□□□□ -0.54
USP4-205ENST00000431357 PSMG1O95456 288 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 APRTP07741 180 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 MAGEA3P43357 314 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 NR2C2P49116 596 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 CLCN3P51790 818 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 SLC6A3Q01959 620 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 OCRLQ01968 901 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 BST1Q10588 318 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 LBRQ14739 615 aaKnown RBP11.71□□□□□ -0.54
USP4-205ENST00000431357 CDO1Q16878 200 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 STXBP5Q5T5C0 1151 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 MAP1SQ66K74 1059 aaPredicted RBP11.71□□□□□ -0.54
USP4-205ENST00000431357 TRIM68Q6AZZ1 485 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 ANO7Q6IWH7 933 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 CDHR3Q6ZTQ4 885 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 DPH6Q7L8W6 267 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 ARCQ7LC44 396 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 PCDH19Q8TAB3 1148 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 FAM172AQ8WUF8 416 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 TRAPPC12Q8WVT3 735 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 ZNF333Q96JL9 665 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 EBNA1BP2Q99848 306 aaKnown RBP11.71□□□□□ -0.54
USP4-205ENST00000431357 FAM167BQ9BTA0 163 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 PDZD7Q9H5P4 517 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 CHCHD3Q9NX63 227 aaKnown RBP11.71□□□□□ -0.54
USP4-205ENST00000431357 STX18Q9P2W9 335 aaKnown RBP11.71□□□□□ -0.54
USP4-205ENST00000431357 ZNF212Q9UDV6 495 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 SORCS3Q9UPU3 1222 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 HEY1Q9Y5J3 304 aa11.71□□□□□ -0.54
USP4-205ENST00000431357 CXorf49A8MYA2 514 aaPredicted RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 C22orf31O95567 290 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 GJB1P08034 283 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 PFKMP08237 780 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 SKIP12755 728 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 CYP3A5P20815 502 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 PGM1P36871 562 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 CCNHP51946 323 aaPredicted RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 MRPS5P82675 430 aaKnown RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 KLC1Q07866 573 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 KPNB1Q14974 876 aaKnown RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 RCN1Q15293 331 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 AMHR2Q16671 573 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 GOLGA7BQ2TAP0 167 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 SLC10A6Q3KNW5 377 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 ACSBG2Q5FVE4 666 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 C6orf163Q5TEZ5 329 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 OLFML1Q6UWY5 402 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 UNC5AQ6ZN44 842 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 TMEM110Q86TL2 294 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 SESTD1Q86VW0 696 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 PPFIBP2Q8ND30 876 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 ZNF668Q96K58 619 aaPredicted RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 SIGLEC10Q96LC7 697 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 SNRNP25Q9BV90 132 aaKnown RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 SLC4A5Q9BY07 1137 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms