RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PLXNA3P51805 1871 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CCDC66A2RUB6 948 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 OPA1O60313 960 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 HSF2BPO75031 334 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 XYLBO75191 536 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 FGGP02679 453 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CSH1P0DML2 217 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CSH2P0DML3 217 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 LCP1P13796 627 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 HOXB8P17481 243 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 LTBRP36941 435 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 NSFP46459 744 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 RPL34P49207 117 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 TKTL1P51854 596 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SLC5A3P53794 718 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 USP46P62068 366 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 MRPS25P82663 173 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 DLX2Q07687 328 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 RAB41Q5JT25 222 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 DCAF12L1Q5VU92 463 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 TMC5Q6UXY8 1006 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SCUBE3Q8IX30 993 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ELMOD1Q8N336 334 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 PSMG2Q969U7 264 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 PABPC5Q96DU9 382 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CPXM1Q96SM3 734 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 NUP85Q9BW27 656 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 AP1M1Q9BXS5 423 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SFXN1Q9H9B4 322 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 IL37Q9NZH6 218 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 NFU1Q9UMS0 254 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 MAGED2Q9UNF1 606 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ATG2AQ2TAZ0 1938 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 RNF40O75150 1001 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 RTN3O95197 1032 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 HMGA1P17096 107 aaKnown RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 PTPN2P17706 415 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 MMP8P22894 467 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 YWHAQP27348 245 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 ACADSBP45954 432 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 SNX16P57768 344 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 CENPCQ03188 943 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 IFRD2Q12894 506 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 MESDQ14696 234 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 RARS2Q5T160 578 aaKnown RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 SEL1L2Q5TEA6 688 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 SYCE2Q6PIF2 218 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 CMASQ8NFW8 434 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 IFT81Q8WYA0 676 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 SEC14L1Q92503 715 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 CD101Q93033 1021 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 ZNF707Q96C28 371 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 C18orf8Q96DM3 657 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 APOL5Q9BWW9 433 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 DDX47Q9H0S4 455 aaKnown RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 SYNCQ9H7C4 482 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 PIDD1Q9HB75 910 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 CYLDQ9NQC7 956 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 COMMD8Q9NX08 183 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 CNOT8Q9UFF9 292 aaKnown RBP14.03□□□□□ -0.16
LIMS1-204ENST00000409441 USP3Q9Y6I4 520 aa14.03□□□□□ -0.16
LIMS1-204ENST00000409441 FAM187AA6NFU0 413 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 GOLGA8KD6RF30 607 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 E5RJQ4 531 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 AGPSO00116 658 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 PAPLNO95428 1278 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 USP17L7P0C7H9 530 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 COMTP21964 271 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 CTNNA1P35221 906 aaKnown RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 GGCXP38435 758 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 PEX5P50542 639 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 ADIGQ0VDE8 80 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 DHX34Q14147 1143 aaKnown RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 SKIV2LQ15477 1246 aaKnown RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 PTPN20Q4JDL3 420 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 C2CD6Q53TS8 623 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 MMS22LQ6ZRQ5 1243 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 PHF13Q86YI8 300 aaPredicted RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 MCOLN2Q8IZK6 566 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 HS6ST3Q8IZP7 471 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 SIX6OS1Q8N1H7 587 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 FEZF2Q8TBJ5 459 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 SMG7Q92540 1137 aaKnown RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 VCPIP1Q96JH7 1222 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 MYRFLQ96LU7 910 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 GDAP1L1Q96MZ0 367 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 RUNDC3BQ96NL0 473 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 RUFY1Q96T51 708 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 SH3GL2Q99962 352 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 CORO1BQ9BR76 489 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 MIS12Q9H081 205 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 RAB17Q9H0T7 212 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 FBXO44Q9H4M3 255 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 FAM114A2Q9NRY5 505 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 HCFC1R1Q9NWW0 138 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 ADAM22Q9P0K1 906 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 DNMT3BQ9UBC3 853 aaKnown RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 TJP2Q9UDY2 1190 aa14.02□□□□□ -0.16
LIMS1-204ENST00000409441 CHORDC1Q9UHD1 332 aaPredicted RBP14.02□□□□□ -0.16
LIMS1-204ENST00000409441 PCDHA3Q9Y5H8 950 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms