RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 REXO1Q8N1G1 1221 aaKnown RBP11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 REPS2Q8NFH8 660 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 ETNPPLQ8TBG4 499 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 TCP10LQ8TDR4 215 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 SOCS4Q8WXH5 440 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 C9orf72Q96LT7 481 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 PPP1R10Q96QC0 940 aaKnown RBP11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 POP1Q99575 1024 aaKnown RBP11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 GBA3Q9H227 469 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 FAM96AQ9H5X1 160 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 MKS1Q9NXB0 559 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 HOXC10Q9NYD6 342 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 BCAP29Q9UHQ4 241 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 CCPG1Q9ULG6 757 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 ADAMTS5Q9UNA0 930 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 SHOC2Q9UQ13 582 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 SNX9Q9Y5X1 595 aa11.02□□□□□ -0.64
NIF3L1-204ENST00000409357 MYH11P35749 1972 aa11.02□□□□□ -0.65
NIF3L1-204ENST00000409357 CCDC160A6NGH7 325 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 RSPH10B2B2RC85 870 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 VWA5AO00534 786 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 SPOPO43791 374 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CNOT3O75175 753 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 USP1O94782 785 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 BMP10O95393 424 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 RSPH10BP0C881 870 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 THRAP10827 490 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PLS3P13797 630 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PEX2P28328 305 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ALDH1A3P47895 512 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CCNA1P78396 465 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 WASHC5Q12768 1159 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 MAP2K5Q13163 448 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 MESDQ14696 234 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 TRIP10Q15642 601 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 RARS2Q5T160 578 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 LPCAT4Q643R3 524 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ATG16L1Q676U5 607 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 UBE2Q1Q7Z7E8 422 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 C4orf33Q8N1A6 199 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PQLC1Q8N2U9 271 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 MINDY2Q8NBR6 621 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 DDHD1Q8NEL9 900 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 NPLOC4Q8TAT6 608 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 DCUN1D1Q96GG9 259 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ANKRD36BP1Q96IX9 119 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 RANBP9Q96S59 729 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CYTH2Q99418 400 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 APBA2Q99767 749 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 FGFBP2Q9BYJ0 223 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 GRIP2Q9C0E4 1043 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 TAS2R14Q9NYV8 317 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 TBC1D7Q9P0N9 293 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ZNF214Q9UL59 606 aaPredicted RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 DRG1Q9Y295 367 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 TSPY2A6NKD2 308 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 H3BSA7 217 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CLDN3O15551 220 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ADCY6O43306 1168 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PARNO95453 639 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 INHBBP09529 407 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 COL6A2P12110 1019 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ADORA2AP29274 412 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CCND3P30281 292 aaPredicted RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 HOXD13P35453 343 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 TRPC1P48995 793 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 SLC12A3P55017 1021 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 TXNL4AP83876 142 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CACNB2Q08289 660 aaPredicted RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ARSHQ5FYA8 562 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PCGF5Q86SE9 256 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 GPBP1Q86WP2 473 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ZNF420Q8TAQ5 688 aaPredicted RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 C1orf54Q8WWF1 131 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 GPATCH1Q9BRR8 931 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ANO3Q9BYT9 981 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 NUF2Q9BZD4 464 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 ACSS3Q9H6R3 686 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 SAYSD1Q9NPB0 183 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 OLFML3Q9NRN5 406 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 CHST7Q9NS84 486 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 VPS28Q9UK41 221 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PTBP2Q9UKA9 531 aaKnown RBP11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 PCDHB2Q9Y5E7 798 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 HEY1Q9Y5J3 304 aa11.01□□□□□ -0.65
NIF3L1-204ENST00000409357 BAZ2BQ9UIF8 2168 aaKnown RBP11□□□□□ -0.65
NIF3L1-204ENST00000409357 SF3B1O75533 1304 aaKnown RBP eCLIP11□□□□□ -0.65
NIF3L1-204ENST00000409357 A0A1W2PPM1 405 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 SLC15A5A6NIM6 579 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 LSM1O15116 133 aaKnown RBP11□□□□□ -0.65
NIF3L1-204ENST00000409357 EDIL3O43854 480 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 SGPL1O95470 568 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 CRTAMO95727 393 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 ENO1P06733 434 aaKnown RBP11□□□□□ -0.65
NIF3L1-204ENST00000409357 OCM2P0CE71 109 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 OCMP0CE72 109 aaPredicted RBP11□□□□□ -0.65
NIF3L1-204ENST00000409357 SRGAP2CP0DJJ0 459 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 SRGAP2BP0DMP2 458 aa11□□□□□ -0.65
NIF3L1-204ENST00000409357 VDRP11473 427 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms