RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 LINC00271P0C7V0 271 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ATF2P15336 505 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ATF6P18850 670 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 KDELR1P24390 212 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 RDXP35241 583 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 BMPR1AP36894 532 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ALDH1A3P47895 512 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 KCNJ1P48048 391 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TUFMP49411 452 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 ERVFC1P60507 584 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TAF10Q12962 218 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CA9Q16790 459 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ERMARDQ5T6L9 678 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 SPOCD1Q6ZMY3 1216 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ARCQ7LC44 396 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 BHLHA9Q7RTU4 235 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 RFX6Q8HWS3 928 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CCDC105Q8IYK2 499 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ZDHHC14Q8IZN3 488 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 PYROXD2Q8N2H3 581 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 C2orf15Q8WU43 125 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 IRGQQ8WZA9 623 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ZNF512Q96ME7 567 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 SLC2A13Q96QE2 648 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 SNRNP25Q9BV90 132 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 ABCC13Q9NSE7 274 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 SAE1Q9UBE0 346 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 TTC7AQ9ULT0 858 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 AP4E1Q9UPM8 1137 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 UNC80Q8N2C7 3258 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 XIRP2A4UGR9 3374 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MDM4O15151 490 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CREB3O43889 395 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CST8O60676 142 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ARHGEF15O94989 841 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TJP3O95049 919 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 RTN3O95197 1032 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 KLRC2P26717 231 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 GGCXP38435 758 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CDKN2BP42772 138 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ITIH3Q06033 890 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CLUL1Q15846 466 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CYP4V2Q6ZWL3 525 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 SND1Q7KZF4 910 aaKnown RBP eCLIP3.86□□□□□ -1.793e-12■■■■□ 21.6
RTN4-208ENST00000404909 STRADAQ7RTN6 431 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ZNF572Q7Z3I7 529 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 SCD5Q86SK9 330 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TAC4Q86UU9 113 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MON1AQ86VX9 555 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MIB1Q86YT6 1006 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MAP7D3Q8IWC1 876 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MMGT1Q8N4V1 131 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 GPR161Q8N6U8 529 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 PRELID2Q8N945 189 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TTC16Q8NEE8 873 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 DQX1Q8TE96 717 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 POF1BQ8WVV4 589 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CENPIQ92674 756 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 CCDC114Q96M63 670 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 PNKPQ96T60 521 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 NPY6RQ99463 290 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 C11orf84Q9BUA3 381 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 PARD6BQ9BYG5 372 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TRIM31Q9BZY9 425 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 UBE2OQ9C0C9 1292 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 ZBP1Q9H171 429 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 WDCPQ9H6R7 721 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ANKZF1Q9H8Y5 726 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 OSER1Q9NX31 292 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 DMGDHQ9UI17 866 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 SCML2Q9UQR0 700 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 R3HDM2Q9Y2K5 976 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 C5orf42Q9H799 3197 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TRIOBPQ9H2D6 2365 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 hCG_1818297A0A087WSY0 165 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ESYT3A0FGR9 886 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ZSCAN5CA6NGD5 496 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 SLC38A8A6NNN8 435 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 HIDE1A8MVS5 230 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CCDC188H7C350 402 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 DYNC1I1O14576 645 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 FSCN2O14926 492 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TTI1O43156 1089 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 RAD51CO43502 376 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 ABLIM3O94929 683 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MAP3K6O95382 1288 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MOCS2O96007 188 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 CTSAP10619 480 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 PBX2P40425 430 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TUBB4BP68371 445 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 GUCY2DQ02846 1103 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TWF1Q12792 350 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 EFEMP1Q12805 493 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 RAB33AQ14088 237 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 C10orf120Q5SQS8 335 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 RASIP1Q5U651 963 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 OTUD1Q5VV17 481 aaPredicted RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 TPGS2Q68CL5 300 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CCDC137Q6PK04 289 aaKnown RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms