RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 UGP2Q16851 508 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 SLC45A4Q5BKX6 768 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 CYP4X1Q8N118 509 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 SPOCK2Q92563 424 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 CMTM5Q96DZ9 223 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 WDCPQ9H6R7 721 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 VTA1Q9NP79 307 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 CDY2AQ9Y6F7 541 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 CDY1Q9Y6F8 540 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ZC3H4Q9UPT8 1303 aaKnown RBP19.15■□□□□ 0.66
USP48-204ENST00000400301 CHADO15335 359 aa19.14■□□□□ 0.66
USP48-204ENST00000400301 ARF4P18085 180 aaPredicted RBP19.14■□□□□ 0.66
USP48-204ENST00000400301 GRIK1P39086 918 aa19.14■□□□□ 0.66
USP48-204ENST00000400301 SP2Q02086 613 aa19.14■□□□□ 0.66
USP48-204ENST00000400301 ZDHHC17Q8IUH5 632 aa19.14■□□□□ 0.66
USP48-204ENST00000400301 WDR27A2RRH5 827 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 AVILO75366 819 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 PPHLN1Q8NEY8 458 aaKnown RBP19.14■□□□□ 0.65
USP48-204ENST00000400301 TRIM62Q9BVG3 475 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 LRRC40Q9H9A6 602 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 SP110Q9HB58 689 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 DCDC2Q9UHG0 476 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 C15orf41Q9Y2V0 281 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 A0A1B0GUL6 1792 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 C5orf60A6NFR6 353 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 RECQL4O94761 1208 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 C1orf127Q8N9H9 656 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 DNAJB3Q8WWF6 145 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 CDCA5Q96FF9 252 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 AP3B1O00203 1094 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 AIM2O14862 343 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 CASQ2O14958 399 aaPredicted RBP19.14■□□□□ 0.65
USP48-204ENST00000400301 EDF1O60869 148 aaKnown RBP19.14■□□□□ 0.65
USP48-204ENST00000400301 YWHAZP63104 245 aaKnown RBP19.14■□□□□ 0.65
USP48-204ENST00000400301 KIF19Q2TAC6 998 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 NAPEPLDQ6IQ20 393 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 DDX1Q92499 740 aaKnown RBP19.14■□□□□ 0.65
USP48-204ENST00000400301 CPT1BQ92523 772 aa19.14■□□□□ 0.65
USP48-204ENST00000400301 TCRBV9S1A1TA0A576 114 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 KRT16P08779 473 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 TKTL1P51854 596 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 CES3Q6UWW8 571 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 ZCCHC23Q6ZST2 131 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 PLEKHH3Q7Z736 793 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 CD101Q93033 1021 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 EFR3BQ9Y2G0 817 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 GLI3P10071 1580 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 MYH11P35749 1972 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 ZNF541Q9H0D2 1346 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 SOWAHBA6NEL2 793 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 CD48P09326 243 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 MGAT1P26572 445 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 CASP2P42575 452 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 SLC1A5Q15758 541 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 TSHZ1Q6ZSZ6 1077 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 XYLT1Q86Y38 959 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 SPATA2LQ8IUW3 424 aaPredicted RBP19.13■□□□□ 0.65
USP48-204ENST00000400301 SLCO2A1Q92959 643 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 ATP6V1E2Q96A05 226 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 KRT82Q9NSB4 513 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 CNTFP26441 200 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 COPAP53621 1224 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 MGAT5Q09328 741 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 PREPLQ4J6C6 727 aaPredicted RBP19.13■□□□□ 0.65
USP48-204ENST00000400301 ANKRD20A4Q4UJ75 823 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 ANKRD20A2Q5SQ80 823 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 RNASEH2BQ5TBB1 312 aaKnown RBP19.13■□□□□ 0.65
USP48-204ENST00000400301 N4BP2L1Q5TBK1 243 aaPredicted RBP19.13■□□□□ 0.65
USP48-204ENST00000400301 ANKRD20A1Q5TYW2 823 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 OTOAQ7RTW8 1153 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 ZNF526Q8TF50 670 aaPredicted RBP19.13■□□□□ 0.65
USP48-204ENST00000400301 SEC14L1Q92503 715 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 OXNAD1Q96HP4 312 aaPredicted RBP19.13■□□□□ 0.65
USP48-204ENST00000400301 C12orf42Q96LP6 360 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 ELOVL4Q9GZR5 314 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 PCDHGC3Q9UN70 934 aa19.13■□□□□ 0.65
USP48-204ENST00000400301 RNF103O00237 685 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 JCHAINP01591 159 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 TCF4P15884 667 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 NR2C2P49116 596 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 POU5F1Q01860 360 aaKnown RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 PCSK7Q16549 785 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 GNASQ5JWF2 1037 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 C9orf131Q5VYM1 1079 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 ANKRD22Q5VYY1 191 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 PIGWQ7Z7B1 504 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 STRA8Q7Z7C7 330 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 IFT43Q96FT9 208 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 MAGEB5Q9BZ81 275 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 LGALS13Q9UHV8 139 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 TIMM13Q9Y5L4 95 aaPredicted RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 GPR25O00155 361 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 B3GAT3O94766 335 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 PAN2Q504Q3 1202 aaKnown RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 ZNF410Q86VK4 478 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 FITM2Q8N6M3 262 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 ADAM32Q8TC27 787 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 LRRC39Q96DD0 335 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 NAF1Q96HR8 494 aaKnown RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 TBC1D10AQ9BXI6 508 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms