RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ERMARDQ5T6L9 678 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ZNF333Q96JL9 665 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 MIEF1Q9NQG6 463 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 UXTQ9UBK9 157 aaPredicted RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 CDY2AQ9Y6F7 541 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 TMEM120BA0PK00 339 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CCNT2O60583 730 aaKnown RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 CD44P16070 742 aaKnown RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 BTNL9Q6UXG8 535 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 TRPM4Q8TD43 1214 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 DEFB118Q96PH6 123 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 NMRK1Q9NWW6 199 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 NWD1Q149M9 1564 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CASZ1Q86V15 1759 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 KRT20P35900 424 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 DENND1BQ6P3S1 775 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 MTSS1LQ765P7 747 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 EME1Q96AY2 570 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 KIF2CQ99661 725 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 OMDQ99983 421 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 STOML1Q9UBI4 398 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 HES2Q9Y543 173 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 RASSF9O75901 435 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 RECQL4O94761 1208 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 OVGP1Q12889 678 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CCDC142Q17RM4 750 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CBWD3Q5JTY5 395 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CBWD5Q5RIA9 395 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 DACT2Q5SW24 774 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 DET1Q7L5Y6 550 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 STRA8Q7Z7C7 330 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 VPS33BQ9H267 617 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 RBM22Q9NW64 420 aaKnown RBP eCLIP11.69□□□□□ -0.54
TTC28-201ENST00000397906 TRDMT1O14717 391 aaKnown RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 GUCA1AP43080 201 aaPredicted RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 KRT78Q8N1N4 520 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CERS4Q9HA82 394 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 FNTAP49354 379 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 ACTN3Q08043 901 aaPredicted RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 ACOX2Q99424 681 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 RANBP17Q9H2T7 1088 aaKnown RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 WTIPA6NIX2 430 aaPredicted RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 TRIM66O15016 1216 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 MTA2O94776 668 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 MARSP56192 900 aaKnown RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 PTPAQ15257 358 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 PREPLQ4J6C6 727 aaPredicted RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 TAF2Q6P1X5 1199 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 ILDR2Q71H61 639 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 LONP2Q86WA8 852 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 TC2NQ8N9U0 490 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 DMAP1Q9NPF5 467 aaPredicted RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 APOBEC3HQ6NTF7 200 aaKnown RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 VANGL2Q9ULK5 521 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 LMTK2Q8IWU2 1503 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 DISP2A7MBM2 1401 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 RBAK-RBAKDNI3L0D1 243 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 RRM1P23921 792 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 HDAC4P56524 1084 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 MARC1Q5VT66 337 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 MMGT1Q8N4V1 131 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CAMKK1Q8N5S9 505 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 CCNG1P51959 295 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 HIRAP54198 1017 aaPredicted RBP11.69□□□□□ -0.54
TTC28-201ENST00000397906 SLC29A2Q14542 456 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 GRAMD1AQ96CP6 724 aa11.69□□□□□ -0.54
TTC28-201ENST00000397906 NUDT14O95848 222 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 ELNP15502 786 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 MMP14P50281 582 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 KIAA1257Q9ULG3 409 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 KIDINS220Q9ULH0 1771 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 NFIL3Q16649 462 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 MARK2Q7KZI7 788 aaKnown RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 PRUNE1Q86TP1 453 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 TMEM159Q96B96 161 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 UBE2OQ9C0C9 1292 aaKnown RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 SPAG6O75602 509 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 ANGPT1Q15389 498 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 GLT6D1Q7Z4J2 308 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 MYO1CO00159 1063 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SETMARQ53H47 684 aaPredicted RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 ZSWIM1Q9BR11 485 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SOHLH2Q9NX45 425 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 MST1RQ04912 1400 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 GSNP06396 782 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SMIM10L2AP0DMW4 78 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SMIM10L2BP0DMW5 78 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 PRKAR2AP13861 404 aaKnown RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 COLGALT1Q8NBJ5 622 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 E2F7Q96AV8 911 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SEMA6BQ9H3T3 888 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 USP32Q8NFA0 1604 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 FOXP2O15409 715 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 PMS1P54277 932 aaKnown RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 FBXL19Q6PCT2 694 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 CDH2P19022 906 aaPredicted RBP11.68□□□□□ -0.54
TTC28-201ENST00000397906 TNIP2Q8NFZ5 429 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 SKA1Q96BD8 255 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 ERP44Q9BS26 406 aa11.68□□□□□ -0.54
TTC28-201ENST00000397906 OSBPL1AQ9BXW6 950 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms