RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 ZNF658Q5TYW1 1059 aaPredicted RBP17.45■□□□□ 0.38
PTPRK-208ENST00000392449 EGFLAMQ63HQ2 1017 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 ISM2Q6H9L7 571 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 ARMCX6Q7L4S7 300 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 CCDC186Q7Z3E2 898 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 OLIG1Q8TAK6 271 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 TMEM176AQ96HP8 235 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 DUSP9Q99956 384 aaKnown RBP17.45■□□□□ 0.38
PTPRK-208ENST00000392449 PNPLA8Q9NP80 782 aa17.45■□□□□ 0.38
PTPRK-208ENST00000392449 MBD1Q9UIS9 605 aaPredicted RBP17.45■□□□□ 0.38
PTPRK-208ENST00000392449 TNRC6BQ9UPQ9 1833 aaKnown RBP17.45■□□□□ 0.38
PTPRK-208ENST00000392449 TULP2O00295 520 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 STC2O76061 302 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 KLKB1P03952 638 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 ADRB1P08588 477 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 DHPSP49366 369 aaPredicted RBP17.44■□□□□ 0.38
PTPRK-208ENST00000392449 LIMK1P53667 647 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 GRAMD4Q6IC98 578 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 Q6ZNB5 142 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 PGBD3Q8N328 593 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 NDRG1Q92597 394 aaKnown RBP17.44■□□□□ 0.38
PTPRK-208ENST00000392449 EDEM2Q9BV94 578 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 DNMT3LQ9UJW3 386 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 LSM7Q9UK45 103 aaKnown RBP17.44■□□□□ 0.38
PTPRK-208ENST00000392449 USP3Q9Y6I4 520 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 LNP1A1A4G5 178 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 PRRT4C9JH25 899 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 TM4SF5O14894 197 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 CACNG3O60359 315 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 ALDH1A2O94788 518 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 P2RY2P41231 377 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 EFEMP1Q12805 493 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 HSF5Q4G112 596 aaPredicted RBP17.44■□□□□ 0.38
PTPRK-208ENST00000392449 RNF43Q68DV7 783 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 PIGZQ86VD9 579 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 ZC3H3Q8IXZ2 948 aaKnown RBP17.44■□□□□ 0.38
PTPRK-208ENST00000392449 TMEFF1Q8IYR6 380 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 POLMQ9NP87 494 aaPredicted RBP17.44■□□□□ 0.38
PTPRK-208ENST00000392449 RMND1Q9NWS8 449 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 RASAL2Q9UJF2 1139 aa17.44■□□□□ 0.38
PTPRK-208ENST00000392449 TPRP12270 2363 aaKnown RBP17.43■□□□□ 0.38
PTPRK-208ENST00000392449 PLXND1Q9Y4D7 1925 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 GOLGA6L4A6NEF3 574 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 HOXB2P14652 356 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 GABRG2P18507 467 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 PTGER3P43115 390 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 PLA2G4AP47712 749 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 GOLGA8FQ08AF8 430 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 GOLGA8DPQ0D2H9 430 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 LRMPQ12912 555 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 GOLGA7BQ2TAP0 167 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 MAP7D1Q3KQU3 841 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 KLHDC10Q6PID8 442 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 CYP2U1Q7Z449 544 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 DEFB119Q8N690 84 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 PIGKQ92643 395 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 GSDMAQ96QA5 445 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 TSG101Q99816 390 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 RAD54BQ9Y620 910 aa17.43■□□□□ 0.38
PTPRK-208ENST00000392449 ATXN2Q99700 1313 aaKnown RBP17.43■□□□□ 0.38
PTPRK-208ENST00000392449 A0A1W2PQF6 199 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 SLC16A3O15427 465 aaKnown RBP17.42■□□□□ 0.38
PTPRK-208ENST00000392449 STX10O60499 249 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 CD44P16070 742 aaKnown RBP17.42■□□□□ 0.38
PTPRK-208ENST00000392449 ARHGAP17Q68EM7 881 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 KIAA1211LQ6NV74 962 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 SPATA20Q8TB22 786 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 SMARCE1Q969G3 411 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 SLC35C1Q96A29 364 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 CCDC34Q96HJ3 373 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 SLC6A17Q9H1V8 727 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 CD93Q9NPY3 652 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 MARK1Q9P0L2 795 aa17.42■□□□□ 0.38
PTPRK-208ENST00000392449 GON4LQ3T8J9 2241 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CEP192Q8TEP8 1941 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 C4orf47A7E2U8 309 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 MAP3K13O43283 966 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CALCAP01258 141 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CISD3P0C7P0 127 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 RALAP11233 206 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 NTSR1P30989 418 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CORO1AP31146 461 aaKnown RBP17.41■□□□□ 0.38
PTPRK-208ENST00000392449 DGKGP49619 791 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 TKTL1P51854 596 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 FKBP3Q00688 224 aaKnown RBP17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CUL2Q13617 745 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 COBLL1Q53SF7 1204 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 RAB41Q5JT25 222 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 N4BP2L1Q5TBK1 243 aaPredicted RBP17.41■□□□□ 0.38
PTPRK-208ENST00000392449 BHLHA9Q7RTU4 235 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CHPFQ8IZ52 775 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 SPACA7Q96KW9 195 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 XPO6Q96QU8 1125 aaKnown RBP17.41■□□□□ 0.38
PTPRK-208ENST00000392449 ULBP1Q9BZM6 244 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 TMEM74BQ9NUR3 256 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CACNA2D2Q9NY47 1150 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CLIC5Q9NZA1 410 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CALCOCO1Q9P1Z2 691 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 WDR35Q9P2L0 1181 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms